OR10AB1P Olfactory Receptor
| Gene Symbol | OR10AB1P1 (View this gene in GeneCards) |
| Family | 10 |
| Subfamily | AB |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-91, HsOR11.5.1P, ORL3504 |
| External Ids | HGNC: 14804 GeneBank: AB065766, AF399452, BK004574, NG_004153 ORDB: ORL3504 |
| Build #39 labels | OR10AB1P |
| Chromosomal location | 11:7,728,400-7,729,337 (+) |
| Cluster | 11@8 |
| Synteny | CLIC#25 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR10R3P | 50.99% | 304 |
| OR10T1P | 51.32% | 302 |
| OR10T2 | 52% | 300 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR10AB3 | 78% | 312 |
| Mouse | Or10ab4 | 75% | 311 |
| Rat | Or10ab4 | 75% | 311 |
| Cow | OR10AB6 | 77% | 305 |
| Orang | OR10T1 | 51% | 302 |
| Horse | OR10AB7 | 77% | 313 |
| Chimp | OR10AB1 | 97% | 313 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | DB349002 |
| mRNA | AX721063 |
| GNF Atlas2 | gnf1h10982_at |
Sequence information
| Nucleotide sequence |
ATGGGCAATCACACTGCAGTGAGCCTATTCCTTCTGTGGGGATTTTCCAGTTTTTCAGAC CTGCAGAGTCTACTTTTTGTGGTGATTCTCTTCTACATGTGACCATCCTAGCTGCAAACG TGTCCATAATGGGGGCCATCAAGCTCAGCCACAACCTTCACACTCCTATGTACTTTTTCC TCTGTGGCCTGTCCTTTTCAGAAACTTGTACCACTGTGGTAGTAATCCCTCGCATGTTGG TGGACTTTCTATCAGAGAGCAAGACCATTTCTCTTCCTGAGTGTGCCACACAGATGTTTT TCTTTCTGGGCTTTGCATCCAACAACTGTTTCATCATGGCCGCTATGTCCTACGACCGCT ACACGGCCATCCACAACCCACTGCAGTACCACACCCTTATGACAAGAAAGATCTGCTTGC AGATGATGATGGCTTCTTGGATGGTTGGGTTCCTGTTTTCTCTGTGCATCATCGTCACTG TATTCAACTTGTCTCTTTGCGACTTGAACACTATCCAGCACTATTTCTGTGATATCTCAC CAGTGGTCTCCCTTGCTTGTAATTACACTTTCTATCATGAAATGGCTATTTTTGTGCTCT CTGCCTTTGTGTTGGTGGGCAGCTGTATTTTAATTATGATTTCCTATGTCTTCATTGTGT TCATAGTCATAAAGATGCCCTCTGCAAAGGGGAGGTCTAAGGCCTTCTCAACTTGCTCCT CCCACCTCACTGTTGTGTCCATACACTATGGATTTGCTTGCTTTGTCTATTTGAGGCCCA AGAACAGCAACTCCTTCGATGAAGACATGCTGACGGCCATGATATATACAATACTGATGC CTCTGCTTAACCCCATCGTGTACAGTCTGAGAAACAAAGAAATGCAGATAGCCCTAAGAA AAACACTAGGCAGTGTATTTGGGGTTTTCCCTCAGAAG |
| Conceptual translation |
MGNHTAVSLFLLWGFSSFSDLQSLLFVVIL/LHVTILAANVSIMGAIKLSHNLHTPMYF FLCGLSFSETCTTVVVIPRMLVDFLSESKTISLPECATQMFFFLGFASNNCFIMAAMSYD RYTAIHNPLQYHTLMTRKICLQMMMASWMVGFLFSLCIIVTVFNLSLCDLNTIQHYFCDI SPVVSLACNYTFYHEMAIFVLSAFVLVGSCILIMISYVFIVFIVIKMPSAKGRSKAFSTC SSHLTVVSIHYGFACFVYLRPKNSNSFDEDMLTAMIYTILMPLLNPIVYSLRNKEMQIAL RKTLGSVFGVFPQK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | C/A | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) | |
| 11 | 7,728,424 | 7,728,424 | SNP | C/A | 1000GP (CEU, CHBJPT) | |
| 11 | 7,728,619 | 7,728,619 | SNP | T/A | 1000GP (CEU) | |
| 11 | 7,729,019 | 7,729,019 | SNP | C/T | 1000GP (CHBJPT) | |
| 11 | 7,729,075 | 7,729,075 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 7,749,971 | 7,749,971 | SNP | A/C | rs61890084 (DbSNP) | |
| 11 | 7,750,446 | 7,750,446 | SNP | C/T | rs17290662 (DbSNP) | |
| 11 | 7,750,622 | 7,750,622 | SNP | C/T | rs4237761 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 7,749,847 | 7,752,884 | CopyNumber | #66 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR10AB1P.aApr07 | exon_5UTR | chr11 | 7,705,289 | 7,705,655 | + | |
| exon_5UTR | chr11 | 7,706,225 | 7,706,278 | + | ||
| exon_5UTR | chr11 | 7,709,401 | 7,709,517 | + | ||
| main_exon | CDS_partial | chr11 | 7,728,858 | 7,729,337 | + | |
| 3UTR | chr11 | 7,729,337 | 7,729,406 | + | ||
| OR10AB1P.bApr07-unspliced | main_exon | 5UTR | chr11 | 7,728,269 | 7,728,400 | + |
| CDS_partial | chr11 | 7,728,400 | 7,729,301 | + | ||