OR10AF1P Olfactory Receptor
| Gene Symbol | OR10AF1P1 (View this gene in GeneCards) |
| Family | 10 |
| Subfamily | AF |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR11.11.36P |
| External Ids | HGNC: 19606 GeneBank: NG_004298 |
| Build #39 labels | OR10AF1P |
| Chromosomal location | 11:55,948,119-55,948,923 (-) |
| Cluster | 11@56 |
| Synteny | CLIC#26 |
| Remarks | Disrupted by LTR repeat |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR10AG1 | 49.43% | 261 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR10AG65 | 62% | 261 |
| Mouse | Or10ag58 | 58% | 261 |
| Rat | Or10ag58 | 54% | 261 |
| Cow | OR10AG65 | 60% | 261 |
| Orang | OR10A5 | 43% | 268 |
| Horse | OR10AG93 | 55% | 257 |
| Chimp | OR10AG1P | 51% | 255 |
Sequence information
| Nucleotide sequence |
CATTGTTCTAATAACAAAGCTGGACCTTAGTCTCCAAACACCTATTTTTTTTTGGCAATT TTTCCTTCTTAGAAATTTGTTATCTGTCAGTTACTCTCCCAAGAATGCTCATTAATCTTG GGACCCAGAGTGGAATAACCTCTTTAGTTGCCTGGGCTACACAAATGTGCCACTTTCTTA TACTGGGAGCCACAGAGTGCTTCTTTCTGGCTGTGATGGCCTAAGACCGCTATGTGGCCA TTTGTAACCCTCTGCACTATCTTCTCTTCATAAACCATGAGGTCTGTACCCAGATGGTGG CTGGCTCCTGGATCACTGGAACTCCTGTCTGGATAGTGCAGACATTCCAGGTTTTCTCTT TGCCATTTTATGGTTCCAAACAAATCAAGCACCTGTTCTGTGACATTACCCCAACACTTA CACTGTCCTGTGGGAACATGTTTTTGAATGAGATGAATCTCTGTATAGGTACTGTGTTTC ATGTCCTGGCTCCATGTCTGTTGATATTTATCCCTGGCGGCAAAATTGTCTGCACAATCT ATAAATGGCCATCAGCTACAACTACGAGTTGTGTCAAAGTTTTCTCCATCTGTTTATCTC ATCTCATAATTGTGGCATTGTCATTTGGATAAGGCTTCATTACATACTTAAGACCCCAAA CCCGTCATTCAGCAGGAACTGACAAAATGCTTTCTCTTTTTCGTACTATTGTGACTCCAT TATTAATTCCATGACATATAGTCTAAGGAATACCAATGTGTAATGGTCTTGAAAAAAAAA TCACTATCATGATCTTGTTTTCTTA |
| Conceptual translation |
IVLITKLDLSLQTPIFFW\FSFLEICYLSVTLPRMLINLGTQSGITSLVAWATQMCHFL ILGATECFFLAVMAXRYVAICNPLHYLLFINHEVCTQMVAGSWITGTPVWIVQTFQVFS LPFYGSKQIKHLFCDITPTLTLSCGNMFLNEMNLCIGTVFHVLAPCLLIFIPGGKIVCTI YKWPSATTTSCVKVFSICLSHLIIVALSFGXFITYLRPQTRHSAGTDKMLSLFRTIVTP LLIP/TYSLRNTNVXSXKNHYHDLVFL Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 55,715,697 | 55,715,697 | SNP | A/C | rs17513829 (DbSNP) | |
| 11 | 55,715,921 | 55,715,921 | SNP | A/C | rs17513872 (DbSNP) | |
| 11 | 55,715,793 | 55,715,793 | SNP | A/G | rs17513857 (DbSNP) | |
| 11 | 55,716,134 | 55,716,134 | SNP | A/G | rs12280349 (DbSNP) | |
| 11 | 55,715,826 | 55,715,826 | SNP | A/T | rs11231652 (DbSNP) | |
| 11 | 55,716,318 | 55,716,318 | SNP | A/T | rs17598673 (DbSNP) | |
| 11 | 55,948,221 | 55,948,221 | SNP | C/A | 1000GP (CEU) | |
| 11 | 55,948,317 | 55,948,317 | SNP | A/G | 1000GP (CEU) | |
| 11 | 55,948,350 | 55,948,350 | SNP | A/T | 1000GP (CEU, CHBJPT) | |
| 11 | 55,948,445 | 55,948,445 | SNP | A/C | 1000GP (CEU) | |
| 11 | 55,948,842 | 55,948,842 | SNP | T/A | 1000GP (CEU) | |
| 11 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 55,153,930 | 55,816,828 | CopyNumber | Variation_0308 (DGV) |
| 11 | 55,710,709 | 55,787,839 | CopyNumber | Variation_1245 (DGV) |
| 11 | 55,689,863 | 55,849,156 | CopyNumber | Variation_2927 (DGV) |
| 11 | 54,835,623 | 55,879,426 | CopyNumber | Variation_8690 (DGV) |
| 11 | 55,685,799 | 55,842,512 | CopyNumber | Variation_9189 (DGV) |
| 11 | 55,685,556 | 55,819,544 | CopyNumber | Variation_29912 (DGV), Variation_48846 (DGV) |
| 11 | 55,685,556 | 55,796,170 | CopyNumber | Variation_48845 (DGV) |
| 11 | 55,685,556 | 55,836,620 | CopyNumber | Variation_48847 (DGV) |
| 11 | 55,704,822 | 55,729,751 | CopyNumber | Variation_53105 (DGV) |
| 11 | 55,683,109 | 55,833,490 | CopyNumber | Variation_85786 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.