OR10G2 Olfactory Receptor
Gene Symbol | OR10G21 (View this gene in GeneCards) |
Family | 10 |
Subfamily | G |
Pseudogene | No |
CORP pseudogene probability score | 0.23 (functional) |
Aliases | OR14-41, AE000658-B, HsOR14.2.4, ORL3697 |
External Ids | HGNC: 8170 GeneBank: AB065894, BK004670, NM_001005466 ORDB: ORL3697 |
Build #39 labels | OR10G2 |
Chromosomal location | 14:21,633,913-21,634,842 (-) |
Cluster | 14@22b |
Synteny | CLIC#35 |
Remarks |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR10G1P | 93.87% | 310 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR10G6 | 62% | 295 |
Mouse | Or10g1 | 90% | 310 |
Mouse | Or10g1b | 88% | 310 |
Rat | Or10g1 | 88% | 310 |
Rat | Or10g1b | 87% | 310 |
Cow | OR10G1 | 91% | 310 |
Cow | OR10G1C | 89% | 310 |
Orang | OR10G1P | 91% | 310 |
Orang | OR10G1E | 91% | 310 |
Orang | OR10G1D | 91% | 310 |
Horse | OR10G1 | 92% | 310 |
Horse | OR10G1G | 89% | 310 |
Chimp | OR10G1 | 96% | 310 |
Chimp | OR10G1C | 95% | 310 |
Expression evidences
Source | Accession |
---|---|
mRNA | AB529274 |
GNF Atlas2 | gnf1h11245_at |
Sequence information
Nucleotide sequence |
ATGGGAAAGACCAAAAACACATCGCTGGATGCCGTGGTGACAGATTTCATTCTTCTGGGT TTGTCTCACCCCCCAAATCTAAGAAGCCTCCTCTTCCTGGTCTTCTTCATCATTTACATC CTCACTCAGCTGGGGAACCTGCTCATTCTGCTCACCATGTGGGCTGACCCGAAGCTCTGT GCTCGCCCCATGTACATTCTTCTGGGAGTGCTCTCATTCCTGGACATGTGGCTCTCCTCA GTCACCGTTCCTCGGCTTATTTTGGATTTTACTCCTTCCATCAAGGCTATCCCGTTTGGT GGCTGTGTGGCTCAACTGTATTTCTTTCACTTCCTGGGCAGCACCCAGTGCTTCCTCTAC ACCTTGATGGCCTATGACAGGTACCTAGCAATATGTCAGCCCCTGCACTACCCAGTGCTC ATGAATGGGAGGTTATGCACAGTCCTTGTGGCTGGAGCTTGGGTCGCCGGCTCCATGCAT GGGTCTATCCAGGCCACCTTGACCTTCCGCCTGCCCTACTGTGGGCCCAATCAGGTGGAT TACTTTATCTGTGACATCCGCGCAGTATTGAGACTGGCCTGTGCTGACACAACTGTCAAT GAGCTTGTGACCTTTGTGGACGTCAGGGTAGTGGCCGCCAGTTGCTTCATGTTAATTCTG CTCTCCTATGCCAACATAGTCCATGCCATCCTGAAGATACGCACCGCTGATGGGAGGCGC CGGGCCTTCTCCACCTGTGGCTCCCACCTAATCGTGGTCACAGTCTACTATGTCCCCTGT ATTTTCATCTACCTTAGGGCTGGCTCCAAAGACCCCCTGGATGGGGCAGCGGCTGTGTTT TACACTGTTGTCACTCCATTACTGAACCCCCTCATCTATACACTGAGGAACCAGGAAGTG AAGTCTGCCCTGAAGAGGATAACAGCAGGT |
Conceptual translation |
MGKTKNTSLDAVVTDFILLGLSHPPNLRSLLFLVFFIIYILTQLGNLLILLTMWADPKLC ARPMYILLGVLSFLDMWLSSVTVPRLILDFTPSIKAIPFGGCVAQLYFFHFLGSTQCFLY TLMAYDRYLAICQPLHYPVLMNGRLCTVLVAGAWVAGSMHGSIQATLTFRLPYCGPNQVD YFICDIRAVLRLACADTTVNELVTFVDVRVVAASCFMLILLSYANIVHAILKIRTADGRR RAFSTCGSHLIVVTVYYVPCIFIYLRAGSKDPLDGAAAVFYTVVTPLLNPLIYTLRNQEV KSALKRITAG Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
14 | 100 | -100 | NS | C/G | R/P | 1000GP (YRI, YRI, YRI) |
14 | 100 | -100 | SYN | A/G | H/H | 1000GP (YRI, YRI) |
14 | 21,634,137 | 21,634,137 | NS | C/T | A/T | 1000GP (CEU) |
14 | 21,634,161 | 21,634,161 | NS | G/T | H/N | 1000GP (CEU) |
14 | 21,634,162 | 21,634,162 | SYN | G/T | V/V | 1000GP (CEU) |
14 | 21,634,177 | 21,634,177 | SYN | G/C | S/S | 1000GP (CEU) |
14 | 21,634,283 | 21,634,283 | NS | C/G | R/P | 1000GP (CEU) |
14 | 21,634,436 | 21,634,436 | NS | T/C | H/R | 1000GP (CEU, CHBJPT) |
14 | 21,634,456 | 21,634,456 | SYN | T/C | L/L | 1000GP (CEU, CHBJPT) |
14 | 21,634,589 | 21,634,589 | NS | C/A | R/L | 1000GP (CEU, CHBJPT) |
14 | 22,102,169 | 22,102,169 | NS | A/G | V/A | rs28445447 (DbSNP) |
14 | 22,102,293 | 22,102,293 | NS | C/T | A/T | rs41307110 (DbSNP) |
14 | 22,102,315 | 22,102,315 | SYN | G/A | H/H | rs61753931 (DbSNP) |
14 | 22,102,333 | 22,102,333 | SYN | C/G | S/S | rs41317324 (DbSNP) |
14 | 22,102,374 | 22,102,374 | NS | C/T | G/R | rs12894405 (DbSNP) |
14 | 22,102,414 | 22,102,414 | SYN | A/T | A/A | rs10136017 (DbSNP) |
14 | 22,102,439 | 22,102,439 | NS | C/G | R/P | rs35963889 (DbSNP) |
14 | 22,102,592 | 22,102,592 | NS | C/T | R/H | rs10138694 (DbSNP) |
14 | 22,102,612 | 22,102,612 | SYN | C/T | L/L | rs10138704 (DbSNP) |
14 | 22,102,745 | 22,102,745 | NS | A/C | L/R | rs41314525 (DbSNP) |
14 | 22,102,800 | 22,102,800 | NS | A/G | F/L | rs10146821 (DbSNP) |
14 | 22,102,829 | 22,102,829 | NS | A/G | L/P | rs57476477 (DbSNP) |
14 | 22,102,871 | 22,102,871 | NS | T/C | Q/R | rs61754893 (DbSNP) |
Variations - CNVs
Chr | Start | End | Type | Sources |
---|---|---|---|---|
14 | 21,931,624 | 22,169,502 | CopyNumber | Variation_5318 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
A236T | R209G | R187P | H136R | P98L | R85L | L67F | P57L | M53V | Q43R | K5N | % Freq | CORP | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | A | R | R | H | P | R | L | P | M | Q | K | 53.99 | 0.139 |
2 | A | G | P | R | P | L | L | P | M | Q | K | 6.84 | 0.139 |
3 | A | G | P | H | P | R | L | P | M | Q | K | 5.84 | 0.139 |
4 | A | G | P | H | P | L | L | P | M | Q | K | 5.30 | 0.139 |
5 | A | G | P | R | P | R | L | P | M | Q | K | 4.84 | 0.139 |
6 | A | G | R | R | P | R | F | P | M | Q | K | 4.07 | 0.139 |
7 | A | G | R | H | P | R | F | P | M | Q | K | 3.00 | 0.139 |
8 | A | R | R | H | P | L | L | P | M | Q | K | 2.38 | 0.139 |
9 | T | G | P | R | P | L | L | P | M | Q | K | 2.15 | 0.139 |
10 | T | G | P | H | P | L | L | P | M | Q | K | 2.00 | 0.139 |
11 | A | G | R | R | P | R | L | P | M | Q | K | 1.23 | 0.139 |
12 | A | G | R | H | P | R | L | P | M | Q | K | 1.15 | 0.139 |
13 | A | R | P | H | P | L | L | P | M | Q | K | 1.00 | 0.139 |
14 | A | R | R | R | P | L | L | P | M | Q | K | 1.00 | 0.139 |
15 | A | R | R | H | P | R | F | P | M | Q | K | 0.84 | 0.139 |
16 | A | R | R | H | P | R | L | P | M | R | K | 0.69 | 0.139 |
17 | A | G | R | R | P | L | L | P | M | Q | K | 0.54 | 0.139 |
18 | T | R | R | H | P | L | L | P | M | Q | K | 0.46 | 0.139 |
19 | A | G | R | H | P | L | L | P | M | Q | K | 0.38 | 0.139 |
20 | A | G | P | R | P | L | L | P | V | Q | K | 0.31 | 0.139 |
21 | A | R | P | H | P | R | L | P | M | Q | K | 0.23 | 0.139 |
22 | T | R | P | H | P | L | L | P | M | Q | K | 0.23 | 0.139 |
23 | A | G | P | R | P | R | L | L | M | Q | K | 0.23 | 0.139 |
24 | T | G | P | R | P | R | L | P | M | Q | K | 0.15 | 0.139 |
25 | A | G | P | H | P | L | L | P | V | Q | K | 0.15 | 0.139 |
26 | T | R | R | R | P | L | L | P | M | Q | K | 0.15 | 0.139 |
27 | A | R | R | R | P | R | F | P | M | Q | K | 0.15 | 0.139 |
28 | A | R | R | R | P | R | L | L | M | Q | K | 0.08 | 0.139 |
29 | A | R | P | R | P | L | L | P | M | Q | K | 0.08 | 0.139 |
30 | A | R | P | H | P | R | F | P | M | Q | K | 0.08 | 0.139 |
31 | T | G | R | R | P | L | L | P | M | Q | K | 0.08 | 0.139 |
32 | A | G | P | R | L | R | L | P | M | Q | K | 0.08 | 0.139 |
33 | A | R | R | H | P | R | L | P | M | Q | N | 0.08 | 0.139 |
34 | T | G | R | H | P | L | L | P | M | Q | K | 0.08 | 0.139 |
35 | A | G | R | R | P | L | L | P | V | Q | K | 0.08 | 0.139 |
36 | A | R | R | R | P | R | L | P | M | Q | K | 0.08 | 0.139 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
Accession | Type | Chr | Start | End | Strand | |
---|---|---|---|---|---|---|
OR10G2.aApr07-unspliced | main_exon | 3UTR | chr14 | 21,633,910 | 21,633,913 | - |
CDS | chr14 | 21,633,913 | 21,634,842 | - |