OR10J6P Olfactory Receptor
| Gene Symbol | OR10J6P1 (View this gene in GeneCards) |
| Family | 10 |
| Subfamily | J |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR1-27, HsOR1.4.28P |
| External Ids | HGNC: 14994 GeneBank: AB065629, AF399588, BK004776, NG_004393 |
| Build #39 labels | OR10J6 |
| Chromosomal location | 1:159,598,298-159,599,224 (+) |
| Cluster | 1@159b |
| Synteny | CLIC#4 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR10J5 | 75.73% | 309 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR10J14 | 78% | 308 |
| Mouse | Or10j5 | 74% | 309 |
| Rat | Or10j5 | 74% | 309 |
| Cow | OR10J5 | 73% | 306 |
| Orang | OR10J5 | 76% | 309 |
| Horse | OR10J31P | 77% | 308 |
| Chimp | OR10J5 | 75% | 309 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | R98474 |
| mRNA | AB529281 |
| GNF Atlas2 | gnf1h05865_at |
Sequence information
| Nucleotide sequence |
ATGCGAAGAAAGAACCTCACAGAGGTAACAGAGTTTGTTTTCCTGGGATTCTCCAGATTC CACAAACATCACATCACTCTCTTTGTGGTTTTTCTCATCCTGTACACATTAACTGTGGCT GGCAATGCCATCATCATGACCATCATCTGCATTGACCGTCACCTCCACACTCCCATGTAC TTCTTCCTGAGCATGCTGGCTAGCTCAAAGACAGTGTACACACTGTTCATCATTCCACAG ATGCTCTCCAGCTTCGTAACCCAGACCCAGCCAATCTCCCTAGCAGGTTGTACCACCCAA ACGTTCTTCTTTGTTACCTTGGCCATCAACAATTGCTTCTTGCTCACAGTGATGGGCTAT GACCACTATATGGCCATCTGCAATCCCTTGAGATACAGGGTCATTACGAGCAAGAAGGTG TGTGTCCAGCTGGTGTGTGGAGCCTTTAGCATTGGCCTGGCCATGGCAGCTGTCCAGGTA ACATCCATATTTACCTTACCTTTTTGTCACACGGTGGTTGGTCATTTCTTCTGTGACATC CTCCCTGTCATGAAACTCTCCTGTATTAATACCACTATCAATGAGATAATCAATTTTGTT GTCAGGTTATTTGTCATCCTGGTCCCCATGGGTCTGGTCTTCATCTCCTATGTCCTCATC ATCTCCACTGTCCTCAAGATTGCCTCAGCTGAGGGTTGGAAGAAGACCTTTGCCACCTGT GCCTTCCACCTCACTGTGGTCATTGTCCATTATGGCTGTGCTTCCATTGCCTACCTCATG CCCAAGTCAGAAAACTCTATAGAACAAGACCTCCTTCTCTCAGTGACCTAAACCATCATC ACTCCCCTGCTGAACCCTGTTGTTTACAGCCTAAAGAACAAGGAGGTCAAGGATGCCCTA TGCAGGGCCATGGGCAGAAACATTTCT |
| Conceptual translation |
MRRKNLTEVTEFVFLGFSRFHKHHITLFVVFLILYTLTVAGNAIIMTIICIDRHLHTPMY FFLSMLASSKTVYTLFIIPQMLSSFVTQTQPISLAGCTTQTFFFVTLAINNCFLLTVMGY DHYMAICNPLRYRVITSKKVCVQLVCGAFSIGLAMAAVQVTSIFTLPFCHTVVGHFFCDI LPVMKLSCINTTINEIINFVVRLFVILVPMGLVFISYVLIISTVLKIASAEGWKKTFATC AFHLTVVIVHYGCASIAYLMPKSENSIEQDLLLSVTXIITPLLNPVVYSLKNKEVKDAL CRAMGRNIS Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 1 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI, YRI) | |
| 1 | 159,568,143 | 159,568,143 | SNP | A/G | rs28451784 (DbSNP) | |
| 1 | 159,568,260 | 159,568,260 | SNP | C/T | rs2121477 (DbSNP) | |
| 1 | 159,568,372 | 159,568,372 | SNP | A/C | rs1545366 (DbSNP) | |
| 1 | 159,568,411 | 159,568,411 | SNP | A/C | rs12141516 (DbSNP) | |
| 1 | 159,568,633 | 159,568,632 | Ins(1) | -/C | rs36004847 (DbSNP) | |
| 1 | 159,568,736 | 159,568,753 | In-Del(18) | -/TATGTCCTCATCATCTCC | rs66676910 (DbSNP) | |
| 1 | 159,598,302 | 159,598,302 | SNP | G/A | 1000GP (CEU) | |
| 1 | 159,598,470 | 159,598,470 | SNP | C/T | 1000GP (CEU) | |
| 1 | 159,598,582 | 159,598,582 | SNP | A/C | 1000GP (CEU) | |
| 1 | 159,598,621 | 159,598,621 | SNP | C/A | 1000GP (CEU) | |
| 1 | 159,598,947 | 159,598,947 | SNP | A/C | 1000GP (CHBJPT) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 1 | 159,567,988 | 159,571,014 | CopyNumber | #107 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR10J6P.aApr07-unspliced | main_exon | CDS_partial | chr1 | 159,598,481 | 159,598,959 | + |