Search Olfactory receptors

(e.g. OR1G1, AF087928, Segregating Pseudo)

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OR10J6P Olfactory Receptor

Gene Symbol OR10J6P1 (View this gene in GeneCards)
Family 10
Subfamily J
Pseudogene Yes
CORP pseudogene probability score
Aliases OR1-27, HsOR1.4.28P
External Ids HGNC: 14994   GeneBank: AB065629, AF399588, BK004776, NG_004393   
Build #39 labels OR10J6
Chromosomal location 1:159,598,298-159,599,224 (+)
Cluster 1@159b
Synteny CLIC#4
Remarks

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR10J5 75.73% 309

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR10J14 78% 308
Mouse Or10j5 74% 309
Rat Or10j5 74% 309
Cow OR10J5 73% 306
Orang OR10J5 76% 309
Horse OR10J31P 77% 308
Chimp OR10J5 75% 309

Expression evidences

Source Accession
ESTs R98474
mRNA AB529281
GNF Atlas2 gnf1h05865_at

Sequence information

Nucleotide sequence ATGCGAAGAAAGAACCTCACAGAGGTAACAGAGTTTGTTTTCCTGGGATTCTCCAGATTC
CACAAACATCACATCACTCTCTTTGTGGTTTTTCTCATCCTGTACACATTAACTGTGGCT
GGCAATGCCATCATCATGACCATCATCTGCATTGACCGTCACCTCCACACTCCCATGTAC
TTCTTCCTGAGCATGCTGGCTAGCTCAAAGACAGTGTACACACTGTTCATCATTCCACAG
ATGCTCTCCAGCTTCGTAACCCAGACCCAGCCAATCTCCCTAGCAGGTTGTACCACCCAA
ACGTTCTTCTTTGTTACCTTGGCCATCAACAATTGCTTCTTGCTCACAGTGATGGGCTAT
GACCACTATATGGCCATCTGCAATCCCTTGAGATACAGGGTCATTACGAGCAAGAAGGTG
TGTGTCCAGCTGGTGTGTGGAGCCTTTAGCATTGGCCTGGCCATGGCAGCTGTCCAGGTA
ACATCCATATTTACCTTACCTTTTTGTCACACGGTGGTTGGTCATTTCTTCTGTGACATC
CTCCCTGTCATGAAACTCTCCTGTATTAATACCACTATCAATGAGATAATCAATTTTGTT
GTCAGGTTATTTGTCATCCTGGTCCCCATGGGTCTGGTCTTCATCTCCTATGTCCTCATC
ATCTCCACTGTCCTCAAGATTGCCTCAGCTGAGGGTTGGAAGAAGACCTTTGCCACCTGT
GCCTTCCACCTCACTGTGGTCATTGTCCATTATGGCTGTGCTTCCATTGCCTACCTCATG
CCCAAGTCAGAAAACTCTATAGAACAAGACCTCCTTCTCTCAGTGACCTAAACCATCATC
ACTCCCCTGCTGAACCCTGTTGTTTACAGCCTAAAGAACAAGGAGGTCAAGGATGCCCTA
TGCAGGGCCATGGGCAGAAACATTTCT
Conceptual translation MRRKNLTEVTEFVFLGFSRFHKHHITLFVVFLILYTLTVAGNAIIMTIICIDRHLHTPMY
FFLSMLASSKTVYTLFIIPQMLSSFVTQTQPISLAGCTTQTFFFVTLAINNCFLLTVMGY
DHYMAICNPLRYRVITSKKVCVQLVCGAFSIGLAMAAVQVTSIFTLPFCHTVVGHFFCDI
LPVMKLSCINTTINEIINFVVRLFVILVPMGLVFISYVLIISTVLKIASAEGWKKTFATC
AFHLTVVIVHYGCASIAYLMPKSENSIEQDLLLSVTXIITPLLNPVVYSLKNKEVKDAL
CRAMGRNIS

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
1 100 -100 SNP G/A 1000GP (YRI, YRI, YRI, YRI)
1 159,568,143 159,568,143 SNP A/G rs28451784 (DbSNP)
1 159,568,260 159,568,260 SNP C/T rs2121477 (DbSNP)
1 159,568,372 159,568,372 SNP A/C rs1545366 (DbSNP)
1 159,568,411 159,568,411 SNP A/C rs12141516 (DbSNP)
1 159,568,633 159,568,632 Ins(1) -/C rs36004847 (DbSNP)
1 159,568,736 159,568,753 In-Del(18) -/TATGTCCTCATCATCTCC rs66676910 (DbSNP)
1 159,598,302 159,598,302 SNP G/A 1000GP (CEU)
1 159,598,470 159,598,470 SNP C/T 1000GP (CEU)
1 159,598,582 159,598,582 SNP A/C 1000GP (CEU)
1 159,598,621 159,598,621 SNP C/A 1000GP (CEU)
1 159,598,947 159,598,947 SNP A/C 1000GP (CHBJPT)

Variations - CNVs

Chr Start End Type Sources
1 159,567,988 159,571,014 CopyNumber #107 (Waszak)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.

AceView Gene Models

The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.

Accession Type Chr Start End Strand
OR10J6P.aApr07-unspliced main_exon CDS_partial chr1 159,598,481 159,598,959 +