OR10J9P Olfactory Receptor
| Gene Symbol | OR10J9P1 (View this gene in GeneCards) |
| Family | 10 |
| Subfamily | J |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR1.4.24P |
| External Ids | HGNC: 19639 GeneBank: NG_004366 |
| Build #39 labels | OR10J9P |
| Chromosomal location | 1:159,405,423-159,406,409 (-) |
| Cluster | 1@159b |
| Synteny | CLIC#4 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR10J3 | 77.46% | 284 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR10J3 | 75% | 316 |
| Mouse | Or10j3 | 73% | 309 |
| Rat | Or10j3 | 74% | 306 |
| Cow | OR10J3 | 74% | 309 |
| Orang | OR10J3 | 77% | 306 |
| Horse | OR10J3 | 78% | 307 |
| Chimp | OR10J3P | 75% | 313 |
Sequence information
| Nucleotide sequence |
GTCTTTCCGTTGTCCATTTCCTTCAGATTTAGACATTCTTCAGTGCCAAGGTCAAAGTCC ACTGCTGTGACTGAGCTCTTCTTTGAAGGTTTCTCCAGCTTCAGGTGACAGCACAGATTT GTCTTCTTTGTTGTCTTTCTAACTTTGTACCTGCTGACTGTCTCTGGCAATGTGATTATT GTGACCATTACTCGCCTGGACATTCACCTCCACACCCCCATGTACTTCTTCCTGAGCATT GCTGTCTATCTCTGAGACCTGCTACATGGTGGCCATTACTCCCCATATGCTTTCTCGCCT CTTGAATCCTCACTAGCTTATTGTCATGCAAGGCTGTGTCACTCAGCTCTTCTATGTGAC TTTTGGCATCAACAACTGCTTTCTTCTCATAGCCATGGGATATGATTGCTATGTGGTCTT CTGCAACCCCTTACGGTATTCATAGGTAAGAGGGCTTGTGTCTGGCTGGGATCTGGGTCA CTGAGGATTGGCCTGGGCATGGCTATTGTCCAAGTAACATCTATGTTTGGCCTGCCCTTT TGTGATGACTTTGTCATCTCCCACTTCTTCTGTGATGTGAGACCCCTGCTGAAGCTGGCC TGCACAGACACCACTGTCAATGAGATAATCAACTTTGTTGTCAGTGTCTGTGTCCTTGTC CTACATATTGCCCTGATCTTTATCTCCTATGACCTCATCATCTACACCATCCTTAAGATT GCTTCAACTGAGGGTAGGAAGAAGGCCTGTGCCACCTGCACCTCCCATCTCATAGTGGTC ATCAGCCACTATGGCTATATTTCCATCATCTACCTGAAGCTTAAGTCCCAGAGTTTCCTG GGGCAGAACAGACTCATCTCAGTGACCTACACCATTATCACTCCCCTGCTGAACTCTGTC ATGTAGATCTTGAGGAACAAGGAGCTCAAAGATGCTCTGTGCAGAGCCATGAAGAGGAAA CTCTTCAACCCCCAGTGTATCAAGATT |
| Conceptual translation |
VFPLSISFRFRHSSVPRSKSTAVTELFFEGFSSFRXHRFVFFVVFLTLYLLTVSGNVII VTITRLDIHLHTPMYFFLS\LSISETCYMVAITPHMLSRLLNPHXIVMQGCVTQLFYV TFGINNCFLLIAMGYDCYVVFCNPLRYSXRG/CVWLGSGSLRIGLGMAIVQVTSMFGL PFCDDFVISHFFCDVRPLLKLACTDTTVNEIINFVVSVCVLVLHIALIFISYDLIIYTIL KIASTEGRKKACATCTSHLIVVISHYGYISIIYLKLKSQSFLGQNRLISVTYTIITPLLN SVMXLRNKELKDALCRAMKRKLFNPQCIKI Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 1 | 100 | -100 | SNP | T/C | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI) | |
| 1 | 159,375,348 | 159,375,348 | SNP | C/T | rs12071348 (DbSNP) | |
| 1 | 159,375,417 | 159,375,417 | SNP | A/G | rs61172525 (DbSNP) | |
| 1 | 159,375,903 | 159,375,903 | SNP | C/T | rs11265186 (DbSNP) | |
| 1 | 159,375,955 | 159,375,955 | SNP | A/G | rs17422585 (DbSNP) | |
| 1 | 159,376,044 | 159,376,044 | SNP | C/T | rs16842073 (DbSNP) | |
| 1 | 159,376,066 | 159,376,066 | SNP | A/T | rs16842076 (DbSNP) | |
| 1 | 159,405,558 | 159,405,558 | SNP | T/C | 1000GP (CHBJPT) | |
| 1 | 159,406,113 | 159,406,113 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 1 | 159,406,165 | 159,406,165 | SNP | A/G | 1000GP (CEU) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 1 | 159,373,213 | 159,376,299 | CopyNumber | #106 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.