OR10N1P Olfactory Receptor
| Gene Symbol | OR10N1P1 (View this gene in GeneCards) |
| Family | 10 |
| Subfamily | N |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-285, HsOR11.18.17P, ORL3472 |
| External Ids | HGNC: 14689 GeneBank: BK004633, NG_004339 ORDB: ORL3472 |
| Build #39 labels | |
| Chromosomal location | 11:124,105,052-124,105,974 (-) |
| Cluster | 11@124 |
| Synteny | CLIC#29 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR10D1P | 58.67% | 300 |
| 60.26% | 302 | |
| OR10D4P | 64.97% | 294 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR10N1 | 79% | 311 |
| Mouse | Or10n1 | 80% | 304 |
| Rat | Or10n1 | 80% | 305 |
| Cow | OR10N1 | 80% | 311 |
| Orang | OR10N1 | 90% | 312 |
| Horse | OR10N1 | 81% | 310 |
| Horse | OR10N1B | 80% | 310 |
| Chimp | OR10D4 | 63% | 301 |
Sequence information
| Nucleotide sequence |
ATGAACATGAGGAATCACACATTGCTGAATGAATTCATTCTACGGGGAATACCTCAGACA GAGGGACTGGAGGCTGTACTCTGTGCTGTCTTCTCATTCATCTACCTCTTCACCCTACTT GGAAATTTACTCATCCTTATAGCGATTGTTTCTTCACACTCCTATGTATTTCTTCTTGGG ACGCCTGTCTACTTTTGACATATTGTTCCCATCTGTAACATGTCCCAAGATGCTATTGTA TCTCTCTGGCCAGAGCCCAGTCATTTCTTTTAAGGGATGTGCTTCACAGCTCTTCTTCTA TCAGTTGCTGGGTTCTGCTGAAGGCTGCCTCTATTCTGTGATGTCTTATGATCGCTTTGT TGCCATACATCACACACTGAGATATATGCTCATCATGAAGCCTGGAGTCTGTGTCGGCTT GGTCGTGGTGCCGGGTTGGTGGGTTGTCTTCACGCCACCATTCTGACCTCCTTTACCTTT CAGTTGTCCTACTGTGGCCCCAATCAGGTGGACTACTTCTTCTGTGACATTCCTGCTGTT TTACCCCTGGCTTGTACTGACAGTGCCCTGGCCCAGAGGGTGGGTTCCATAAATGTTGGC TTTCTGGCTTTAACACTTTTGATCAGTGTCTGTGTCTGCTACACTAGCATTGGGATTGCC ATCTTGAGAATCCGCTCATCAGAGGGCAGGCAGAAAGCCTTCTCCACCTGCAGTGCTCAC CTTGTTGCAATCCTCTGTGCCTATGGACCTGTAATCATCATCTATCTGAAGTCCACACCC AACCCCTTGCTTGGTGCCAGGTGCAAATATTAAATAATGTTGTCTCACCCATGCTGAACT CGTTAATCTATTCCTTAAGGAACAAGGAAGTGAAAAGGTCCCTGAAAAGAGTATTCTGAA ATGTTTTACTTACTGTTTGTGAA |
| Conceptual translation |
MNMRNHTLLNEFILRGIPQTEGLEAVLCAVFSFIYLFTLLGNLLILIAIVSS\PMYFFL GRLSTFDILFPSVTCPKMLLYLSGQSPVISFKGCASQLFFYQLLGSAEGCLYSVMSYDRF VAIHHTLRYMLIMKPGVCVGLV/GAGLVGCLHATILTSFTFQLSYCGPNQVDYFFCDIP AVLPLACTDSALAQRVGSINVGFLALTLLISVCVCYTSIGIAILRIRSSEGRQKAFSTCS AHLVAILCAYGPVIIIYLKSTPNPLLG/QVQILNNVVSPMLNSLIYSLRNKEVKRSLKR VFXVLLTVCE Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | T/C | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI) | |
| 11 | 123,976,067 | 123,976,067 | SNP | G/T | rs58908941 (DbSNP) | |
| 11 | 123,976,453 | 123,976,453 | SNP | A/C | rs61907090 (DbSNP) | |
| 11 | 123,976,493 | 123,976,493 | SNP | G/T | rs73605188 (DbSNP) | |
| 11 | 123,976,528 | 123,976,527 | Ins(11) | -/GAAGGGTAGAG | rs72294936 (DbSNP) | |
| 11 | 123,976,531 | 123,976,530 | Ins(11) | -/GGTAGAGGAAG | rs56016616 (DbSNP) | |
| 11 | 124,105,052 | 124,105,052 | SNP | T/C | 1000GP (CHBJPT) | |
| 11 | 124,105,267 | 124,105,267 | SNP | G/T | 1000GP (CEU) | |
| 11 | 124,105,671 | 124,105,671 | SNP | C/G | 1000GP (CHBJPT) | |
| 11 | 124,105,700 | 124,105,700 | SNP | C/T | 1000GP (CHBJPT) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 123,973,759 | 123,976,781 | CopyNumber | #83 (Waszak) |
| 11 | 123,976,370 | 123,976,561 | Ins(15) | #9(modil) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.