OR10Q1 Olfactory Receptor
| Gene Symbol | OR10Q11 (View this gene in GeneCards) |
| Family | 10 |
| Subfamily | Q |
| Pseudogene | No |
| CORP pseudogene probability score | 0.01 (functional) |
| Aliases | OR11-233, HsOR11.12.11, ORL3393 |
| External Ids | HGNC: 15134 GeneBank: AB065735, BK004298, NM_001004471 ORDB: ORL3393 |
| Build #39 labels | OR10Q1 |
| Chromosomal location | 11:58,227,919-58,228,875 (-) |
| Cluster | 11@58 |
| Synteny | CLIC#27 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR10Q2P | 86.47% | 303 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR10Q2 | 83% | 312 |
| Mouse | Or10q1 | 84% | 314 |
| Mouse | Or10q1b | 82% | 316 |
| Rat | Or10q1 | 84% | 311 |
| Cow | OR10V1 | 55% | 305 |
| Orang | OR10Q2P | 84% | 316 |
| Horse | OR10Q2 | 83% | 311 |
| Chimp | OR10Q2P | 86% | 303 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AB529284 |
Sequence information
| Nucleotide sequence |
ATGCCTGTGGGGAAACTTGTCTTCAACCAGTCTGAGCCCACTGAGTTTGTGTTCCGTGCG TTCACCACAGCCACTGAATTCCAGGTTCTTCTCTTCCTTCTCTTCCTCCTCCTCTACTTG ATGATCCTCTGTGGCAACACAGCCATCATCTGGGTGGTGTGCACACACAGCACCCTCCGC ACCCCGATGTATTTCTTCCTGTCCAACCTGTCTTTCCTGGAACTCTGCTACACCACCGTG GTAGTACCCTTGATGCTTTCCAACATTTTGGGGGCCCAGAAGCCCATTTCGTTGGCTGGA TGTGGGGCCCAAATGTTCTTCTTTGTCACCCTCGGCAGCACGGACTGTTTCCTCTTGGCG ATCATGGCCTATGACCGCTATGTGGCTATCTGCCACCCGCTGCACTACACCCTCATCATG ACCCGCGAGCTGTGCACGCAGATGCTGGGTGGGGCCCTGGGCCTGGCCCTCTTCCCCTCC CTGCAGCTCACCGCCTTAATCTTCACCCTGCCCTTTTGCGGCCACCACCAGGAAATCAAC CACTTCCTCTGCGATGTGCCTCCCGTCCTGCGCCTGGCCTGCGCTGACATCCGCGTGCAC CAGGCTGTCCTCTATGTCGTGAGCATCCTCGTGCTGACCATCCCCTTCCTGCTCATCTGC GTCTCCTACGTGTTCATCACCTGTGCCATCCTGAGCATCCGTTCTGCCGAGGGCCGCCGC CGGGCCTTCTCCACCTGCTCCTTCCACCTCACCGTGGTCCTGCTGCAGTATGGCTGCTGC AGCCTCGTGTACCTGCGTCCTCGGTCCAGCACCTCAGAGGATGAGGACAGCCAAATCGCG TTGGTCTACACCTTTGTCACCCCCTTACTCAACCCTTTGCTTTACAGCCTTAGGAACAAG GATGTCAAAGGTGCTCTGAGGAGTGCCATTATCCGTAAAGCAGCCTCTGACGCCAAC |
| Conceptual translation |
MPVGKLVFNQSEPTEFVFRAFTTATEFQVLLFLLFLLLYLMILCGNTAIIWVVCTHSTLR TPMYFFLSNLSFLELCYTTVVVPLMLSNILGAQKPISLAGCGAQMFFFVTLGSTDCFLLA IMAYDRYVAICHPLHYTLIMTRELCTQMLGGALGLALFPSLQLTALIFTLPFCGHHQEIN HFLCDVPPVLRLACADIRVHQAVLYVVSILVLTIPFLLICVSYVFITCAILSIRSAEGRR RAFSTCSFHLTVVLLQYGCCSLVYLRPRSSTSEDEDSQIALVYTFVTPLLNPLLYSLRNK DVKGALRSAIIRKAASDAN Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | NS | C/T | A/T | 1000GP (YRI, YRI, YRI, YRI) |
| 11 | 100 | -100 | SYN | G/A | N/N | 1000GP (YRI) |
| 11 | 57,995,777 | 57,995,777 | NS | A/G | C/R | rs11229301 (DbSNP) |
| 11 | 57,996,084 | 57,996,084 | SYN | A/G | N/N | rs61902844 (DbSNP) |
| 11 | 57,996,312 | 57,996,312 | NS | C/G | E/D | rs4245219 (DbSNP) |
| 11 | 58,228,305 | 58,228,305 | NS | G/A | R/C | 1000GP (CEU, CHBJPT) |
| 11 | 58,228,612 | 58,228,612 | SYN | G/A | N/N | 1000GP (CEU, CHBJPT) |
| 11 | 58,228,840 | 58,228,840 | NS | C/G | E/D | 1000GP (CEU, CHBJPT) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 124 (Hasin) | |||
| 11 | 57,993,391 | 57,996,447 | CopyNumber | #73 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| A318T | R191C | L67M | % Freq | CORP | |
|---|---|---|---|---|---|
| 1 | A | R | L | 83.72 | 0.029 |
| 2 | A | C | L | 13.29 | 0.029 |
| 3 | T | R | L | 2.69 | 0.029 |
| 4 | A | R | M | 0.31 | 0.014 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR10Q1.aApr07-unspliced | main_exon | 3UTR | chr11 | 58,227,916 | 58,227,919 | - |
| CDS | chr11 | 58,227,919 | 58,228,875 | - | ||