OR10R1P Olfactory Receptor
| Gene Symbol | OR10R1P1 (View this gene in GeneCards) |
| Family | 10 |
| Subfamily | R |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR1-10, ORL3057 |
| External Ids | HGNC: 14813 GeneBank: BK004528, NG_002259 ORDB: ORL3057 |
| Build #39 labels | OR10R1P |
| Chromosomal location | 1:158,514,901-158,515,925 (+) |
| Cluster | 1@159a |
| Synteny | CLIC#4 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR10R2 | 61.22% | 312 |
| OR10R3P | 62.46% | 317 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR10R6P | 63% | 315 |
| Mouse | Or10k2 | 46% | 317 |
| Rat | Or10j7 | 42% | 312 |
| Cow | OR10R18P | 65% | 317 |
| Orang | OR10R3P | 61% | 315 |
| Horse | OR10R3D | 64% | 313 |
| Chimp | OR10R3P | 62% | 315 |
Sequence information
| Nucleotide sequence |
CTATCTTCTTTCATTTTTGTTCTCTGTAGGTCAATCTCTGGGACCAAGTCAATCAAGCTA ACTTCTCTGTCAGAGTTCCTGCTTCTTGAGTTCTCCAGCCTTGAAGAAATCCAGCAGATC CTTTTTCTGTCTGCTTGTGGCTATATCTGATTGTTCTGAGTGGAAATATCACCACTGTCA CTGTCATCCGCCTGGATCAAAGCCTCCACATACCTGTATACTTATTCCTAGGGATCCTCT CCATTTCTGGGACATGCTATACCTTTGTCATTCTGCCCAAGATGCTCATAGATCTGTTGT CTTTGCTCAGAACAATCTCATTTATTAACTGCCACTCCAGTGTTCTTCTTTCTGGGTTTT GCTGTCACTAATTTCATGTTCCTGGGCATGACAGTTTATGATTCCTATGTTGCCATCTGC CATCCACTTCACTACCCTGTCCTTACGAGCTGGCAGATATGTAAACAACTGGCAGCAACG TGTGCTGTGATTGTTTTTTTTTGTTTGTTTGTTTTCACTGATAGGCTCCTTCTTAGATTT TCAGCTGCTTTTCTGTGGCCCAAACAAGATCAACCACTACTTCTGTGACATCTCACTGCT TATTCAGCTTGCCTGTACTGATACCTACATCAGGGAGCTAGTCATCTTCATTGGTGGAAT TCTAGCACTTACGGTTCCTCTGATTTTATTTGCATCTCCTATGGCTTCATTGTTCACACC ATCCTGAGGATCCCATATGTGAAAGCAAGCAAAAAGCCATCTCTACTTGTGCCTCCCATC TTATTATGGTCGTTGTCCATTATGGCTGTGCCTCCTTTGTCAACCTGTGACCATCAGCCA AATAATCATCCAGCAAATAACCATCTAGCAAGAACAGGCTGGTGACAGTGACCTTACACA GTTGTGACTCCGTTGTTGAATCCATGGTATATAGCTTCAAGAATAAGAACGTTCAGATGG CCATTTGGAAAGTGATTTGCCAAGGAGGATTTCCTCCTAAAGCTATAATAAGATTATTTC ACATC |
| Conceptual translation |
LSSFIFVLCRSISGTKSIKLTSLSEFLLLEFSSLEEIQQIL/SVCLWLYLIVLSGNITT VTVIRLDQSLHIPVYLFLGILSISGTCYTFVILPKMLIDLLSLLRTISFINC/LQ/FF FLGFAVTNFMFLGMTVYDSYVAICHPLHYPVLTSWQICKQLAAT\LXFFFVCLFSLIG SFLDFQLLFCGPNKINHYFCDISLLIQLACTDTYIRELVIFIGGILALTVPLI/ICISY GFIVHTILRIPYVK/KQKAISTCASHLIMVVVHYGCASFVNLXSAKXSSKXSSKNR LVTVT\TVVTPLLNPW/YSFKNKNVQMAIWKVICQGGFPPKAIIRLFHI Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 1 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI, YRI, YRI) | |
| 1 | 158,484,972 | 158,484,972 | SNP | A/C | rs55845081 (DbSNP) | |
| 1 | 158,485,126 | 158,485,126 | SNP | C/T | rs1873508 (DbSNP) | |
| 1 | 158,485,250 | 158,485,250 | SNP | A/C | rs16840297 (DbSNP) | |
| 1 | 158,485,482 | 158,485,482 | SNP | A/G | rs11264997 (DbSNP) | |
| 1 | 158,515,228 | 158,515,228 | SNP | A/C | 1000GP (CHBJPT) | |
| 1 | 158,515,628 | 158,515,628 | SNP | G/A | 1000GP (CEU) | |
| 1 | 158,515,656 | 158,515,656 | SNP | G/T | 1000GP (CEU, CHBJPT) | |
| 1 | 158,515,692 | 158,515,692 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 1 | 158,515,853 | 158,515,853 | SNP | T/C | 1000GP (CHBJPT) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 1 | 158,484,591 | 158,487,715 | CopyNumber | #26 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.