OR10R3P Olfactory Receptor
| Gene Symbol | OR10R3P1 (View this gene in GeneCards) |
| Family | 10 |
| Subfamily | R |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR1-9, HsOR1.4.6P, ORL3058 |
| External Ids | HGNC: 14829 GeneBank: AB065639, AF399451, BK004673, NG_004362 ORDB: ORL3058 |
| Build #39 labels | OR10R3P |
| Chromosomal location | 1:158,491,219-158,492,157 (+) |
| Cluster | 1@159a |
| Synteny | CLIC#4 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR10R2 | 76.38% | 309 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR10R3 | 86% | 313 |
| Dog | OR10R3B | 85% | 313 |
| Dog | OR10R3C | 84% | 313 |
| Mouse | Or10k2 | 55% | 304 |
| Rat | Or10j2 | 55% | 305 |
| Cow | OR10R3 | 86% | 306 |
| Orang | OR10R3DP | 92% | 311 |
| Horse | OR10R3D | 86% | 313 |
| Horse | OR10R3 | 86% | 313 |
| Chimp | OR10R2 | 76% | 310 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | DB107535 |
| mRNA | AB529255 |
Sequence information
| Nucleotide sequence |
ATGGCCAATTCTTCCTCTGTCACTGAGTTCTTAGTGCTGGGCTTCTCTAGCCTTGGGGAA TTGCAGCTTGTCCTCTTTGCAGTCTTTCTCTGCCTCTATTTGATTATCTTGAGTGGAAAC ATCATCATCATCTCAGTCATTCATTTGGATCACAGCCTCCACACACCCATGTACTTCTTT CTAGGTATTCTTTCTATCTCTGAAATCTTCTACACAACTGTTATTCTGCCCAAGATGCTT ATCAACTTATTCTCTGTATTCAGGACACTCTCCTTTGTGAGTTGTGCCACCCAAATGTTC TTCTTCCTCGGTTTTGCTGTCACTAACTGTCTGCTTCTGGGAGTGATGGGTTATGATCGT TATGCTGCCATCTGTCAGCCTTTGCAATACGCTGTTCTCATGAGCTGGAGAGTATGTGGA CAACTGATAGCAACTTGTATTATTAGTGGCTTCCTAATATCTCTGGTGGGAACAACTTTT GTCTTTAGCCTCCCTTTCTGTGGCTCCAACAAGGTCAACCACTACTTTTGTGATATTTCA CCAGTTATCCGTCTCGCCTGTGCTGACAGCTACATCAGTGAACTGGTCATCTTCATCTTC GGGGTCTTGGTGCTTGTTGTGCCCTTGATATTTATCTGCATTTCCTATGGCTTCATTGTC CGCACCATCCTGAAGATCCCATCAGCTGAAGGCAAACAAAAAGCCTTCTCCACCTGTGCT TCCCATCTCATTGTAGTCATTGTCCATTATGGTTGAGCTTCCTTTGTCTACTTGCGACCC TCAGCCAAATATACATCGGGCAAAGATAGGCTGGTGACAGTGACCTATACCATCATCACC CCAGTCTTGAACCCCATGGTATACAGCCTCAGGAACAACGATGTGCAGATGGCTATTCGG AAACTGATTGGAAAGTCTGGGTTTTCTCTTAAGACTCTA |
| Conceptual translation |
MANSSSVTEFLVLGFSSLGELQLVLFAVFLCLYLIILSGNIIIISVIHLDHSLHTPMYFF LGILSISEIFYTTVILPKMLINLFSVFRTLSFVSCATQMFFFLGFAVTNCLLLGVMGYDR YAAICQPLQYAVLMSWRVCGQLIATCIISGFLISLVGTTFVFSLPFCGSNKVNHYFCDIS PVIRLACADSYISELVIFIFGVLVLVVPLIFICISYGFIVRTILKIPSAEGKQKAFSTCA SHLIVVIVHYGXSFVYLRPSAKYTSGKDRLVTVTYTIITPVLNPMVYSLRNNDVQMAIR KLIGKSGFSLKTL Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 1 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) | |
| 1 | 158,461,016 | 158,461,016 | SNP | A/G | rs10908656 (DbSNP) | |
| 1 | 158,461,205 | 158,461,205 | SNP | C/T | rs16840274 (DbSNP) | |
| 1 | 158,461,366 | 158,461,366 | SNP | T/C | rs1873511 (DbSNP) | |
| 1 | 158,461,398 | 158,461,398 | SNP | C/T | rs61740024 (DbSNP) | |
| 1 | 158,461,417 | 158,461,417 | SNP | A/C | rs61740028 (DbSNP) | |
| 1 | 158,461,418 | 158,461,418 | SNP | G/A | rs1873510 (DbSNP) | |
| 1 | 158,461,528 | 158,461,528 | SNP | C/G | rs61732270 (DbSNP) | |
| 1 | 158,461,563 | 158,461,563 | SNP | T/C | rs1873509 (DbSNP) | |
| 1 | 158,461,888 | 158,461,888 | SNP | G/T | rs4356044 (DbSNP) | |
| 1 | 158,491,226 | 158,491,226 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 1 | 158,491,576 | 158,491,576 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 1 | 158,491,628 | 158,491,628 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 1 | 158,491,725 | 158,491,725 | SNP | C/T | 1000GP (CEU) | |
| 1 | 158,491,773 | 158,491,773 | SNP | C/T | 1000GP (CEU, CHBJPT) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 60 (Hasin) | |||
| 1 | 158,460,909 | 158,463,947 | Deletion | #177 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR10R3P.aApr07-unspliced | main_exon | CDS_partial | chr1 | 158,491,451 | 158,492,157 | + |
| 3UTR | chr1 | 158,492,157 | 158,493,480 | + | ||