OR10T1P Olfactory Receptor
| Gene Symbol | OR10T1P1 (View this gene in GeneCards) |
| Family | 10 |
| Subfamily | T |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR1-5, HsOR1.4.3P, ORL3056 |
| External Ids | HGNC: 14812 GeneBank: AF546280-AF546293, BK004724, NG_002260 ORDB: ORL3056 |
| Build #39 labels | OR10T1P |
| Chromosomal location | 1:158,445,073-158,446,014 (-) |
| Cluster | 1@159a |
| Synteny | CLIC#4 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR10R2 | 60.2% | 304 |
| OR10R3P | 58.42% | 303 |
| OR10T2 | 63.07% | 306 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR10T1 | 88% | 314 |
| Mouse | Or10b1-ps | 56% | 308 |
| Rat | Or10j2 | 56% | 307 |
| Cow | OR10T1 | 92% | 314 |
| Orang | OR10T1 | 93% | 314 |
| Horse | OR10T1BP | 86% | 307 |
| Chimp | OR10T2 | 63% | 313 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | DB342969 |
Sequence information
| Nucleotide sequence |
ATGAAAAGACAGAACCAGAGCATGATCACCGAGTTCATCCTTATAGGCTTCTCAAACCTG GGGGATCTGCAGATCCTTCTCTTCTTTATCTTCCTATTAGTCTACCTGACCACTCTGATG GCCAACACCACCATCATGACAGTCATTCACCTGGACAGGGCTTTGCACACTCCTATGTAC TTCTTCCTCTTTGTCCTTTCATGTTCTGAAACCTGCTACACCTTGGTCATTGTACCCAAA ATGCTTACCAACCTGCTATCCGCAATTCCAACTATTTCTTTCTCTGGATGTGTGGTCCAG CTCTATTTATTTGTGGGCTTGGCTTGTACCAACTGTTTTCTCATTGCTGTGATGGGCTAC GATCGCTATGTTGCCATCTGCAACCCCCTTAACTACACACTCATTGTCAGCTGAGCCACC TGCATGCAGCTGGTTCTAGCCTCCAGCTTTTGTGGCTTCCTGACTTCTGTGATTGTCAAT ATCCTGGTGTTCAGTGTGCTCCTCTGTGCCTCCAATCGGATCAACCACTTTTTCTGTGAC ATTTCCCCTGTCATAAAACTGGGCTGCACAGACACCAACCTGAAGGAGATGGTCATCTTT TTCCTCAGCATTCTGGTATTGCTGGTTCCCCTTGTGTTGATATTCATCTCCTACATCTTC ATAGTTTCCACCATCCTCAAGATCTCCTCAGTGGAAGGACAGTGCAAAGCCTTCGCCACC TGTGCTTCCCACCTCACAGTGGTCGTCGTCCACTATGGCTGTGCTTCCTTTATCTACTTG AGGCCCACATCCCTGTACTCTTCAGATAAGGACCGGCTCGTGGCAGTGACTTATACTGTG ATTACTCCACTACTCAACCCCCTTGTCTATACACTGAGAAATAAAGAAGTAAAGATGGCT CTGAGAAAGGTTCTGGGTAGATGCTTAAATTCCAAAACTGTA |
| Conceptual translation |
MKRQNQSMITEFILIGFSNLGDLQILLFFIFLLVYLTTLMANTTIMTVIHLDRALHTPMY FFLFVLSCSETCYTLVIVPKMLTNLLSAIPTISFSGCVVQLYLFVGLACTNCFLIAVMGY DRYVAICNPLNYTLIVSXTCMQLVLASSFCGFLTSVIVNILVFSVLLCASNRINHFFCD ISPVIKLGCTDTNLKEMVIFFLSILVLLVPLVLIFISYIFIVSTILKISSVEGQCKAFAT CASHLTVVVVHYGCASFIYLRPTSLYSSDKDRLVAVTYTVITPLLNPLVYTLRNKEVKMA LRKVLGRCLNSKTV Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 1 | 100 | -100 | SNP | T/A | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI) | |
| 1 | 158,414,877 | 158,414,877 | SNP | A/T | rs6427437 (DbSNP) | |
| 1 | 158,415,057 | 158,415,057 | SNP | C/T | rs6684251 (DbSNP) | |
| 1 | 158,415,517 | 158,415,517 | SNP | C/T | rs6699757 (DbSNP) | |
| 1 | 158,415,634 | 158,415,633 | Ins(1) | -/G | rs35301489 (DbSNP) | |
| 1 | 158,415,690 | 158,415,690 | SNP | G/T | rs6662167 (DbSNP) | |
| 1 | 158,445,087 | 158,445,087 | SNP | T/A | 1000GP (CEU, CHBJPT) | |
| 1 | 158,445,727 | 158,445,727 | SNP | T/C | 1000GP (CEU, CHBJPT) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| LOC646289.bApr07 | main_exon | CDS_partial | chr1 | 158,445,112 | 158,445,653 | - |
| exon_5UTR | chr1 | 158,461,616 | 158,461,750 | - | ||
| exon_5UTR | chr1 | 158,462,171 | 158,462,202 | - | ||
| exon_5UTR | chr1 | 158,462,253 | 158,462,276 | - | ||