OR10U1P Olfactory Receptor
| Gene Symbol | OR10U1P1 (View this gene in GeneCards) |
| Family | 10 |
| Subfamily | U |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR12-3, HsOR12.5.4P, ORL3673 |
| External Ids | HGNC: 15332 GeneBank: BK004738, NG_004344 ORDB: ORL3673 |
| Build #39 labels | OR10U1P |
| Chromosomal location | 12:55,193,861-55,194,816 (-) |
| Cluster | 12@56 |
| Synteny | CLIC#31 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR10A2 | 53.4% | 294 |
| OR10A4 | 51.64% | 304 |
| OR10A5 | 53.82% | 301 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR10A5 | 53% | 306 |
| Mouse | Or10u5 | 76% | 318 |
| Rat | Or10u3 | 75% | 318 |
| Cow | OR10U1 | 81% | 319 |
| Cow | OR10U1B | 80% | 318 |
| Orang | OR10A5 | 54% | 301 |
| Horse | OR10U1 | 83% | 320 |
| Horse | OR10U1D | 83% | 320 |
| Horse | OR10U1C | 83% | 313 |
| Chimp | OR10A5 | 54% | 301 |
Sequence information
| Nucleotide sequence |
ATGTTTAGCTCTGAGCCCACCATAGATGGAAATCAGTCCCTGTGTGCCAAATTCACATTT GTGGCTTTTTCTTCTATAGAAGAATTACAGCTTGTACTCTTCATTGTGTTCTTAATCATC ACTTATGCACTATAGGAGGAAATATCATCATCATCTCCCTGATCTGGATCACCCCTGCCC TGCACACTCCAATGTATTTCTTCCTGGTGAACCTCTCATTTCTGGAGATGTGCTATACCA CCAGTGTGGTGCCTCATGCTGGTGCACCTGCTGGTGGAGACCAAAACCATAAGTGTGGGT GGCTGTGCAACCCAGATGTACATATTTGCCATCTTGGGACTGACAGAATGCTGCTTGCTA GCAGCTATGGCTTACGATCGCTTTGTAGCTATTTGTTACCCACTGCATTACACTCTCTTC ATGGGCCCTCGTGTTTGTTTGAAATTGGCTGCAGCATCTTGGTTCACTGGAGTGGTGGTG GAGTCAGCCCAGATCACCCTGATCTTCACTTTGCCTTTCTGTGGAACAGGAAAGATTCAA CACTTTTTTGTGACATAATGCCTGTACTGAAACTGGCTTGTATTGATACCTCCCAAATTG AAATTGTGATGTTTTCTCTCTCCGTGCTATTTATTGTGAGTCCTTGTTTCCTCATTCTGT GCTCCCACATGCACATCCCTGTGACCATCTTGAGAATCCCTTCAGCAGCTGGAAGACACA AAGCTTTCTCCACTTGTTCTTCTCATATCTTGGTTGTTTCTCTGTTCTATGGCACTGCCT TGTTCACTTATCTGCAACCTAAGACTGCACACACTCCAGAAACAGACAAAGCAACTGCAC TCATGTACACAATGGTCACACCTGCTTTGAATCCTGTTATCTATACCTTGAGGAACAAGG AAGTAAAGGAAGCCTTTCAAAGGATAACCCAAAGGAACTCTCTTAGACAAACGGCC |
| Conceptual translation |
MFSSEPTIDGNQSLCAKFTFVAFSSIEELQLVLFIVFLI/HLCTIGGNIIIISLIWITP ALHTPMYFFLVNLSFLEMCYTTSVVP\LVHLLVETKTISVGGCATQMYIFAILGLTECC LLAAMAYDRFVAICYPLHYTLFMGPRVCLKLAAASWFTGVVVESAQITLIFTLPFCGTGK IQH/FCDIMPVLKLACIDTSQIEIVMFSLSVLFIVSPCFLILCSHMHIPVTILRIPSAA GRHKAFSTCSSHILVVSLFYGTALFTYLQPKTAHTPETDKATALMYTMVTPALNPVIYTL RNKEVKEAFQRITQRNSLRQTA Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 12 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI) | |
| 12 | 55,587,847 | 55,587,849 | Del(3) | -/ACC | rs72038686 (DbSNP) | |
| 12 | 55,587,848 | 55,587,850 | Del(3) | -/CCA | rs57888652 (DbSNP) | |
| 12 | 55,588,219 | 55,588,219 | SNP | A/G | rs10506344 (DbSNP) | |
| 12 | 55,588,321 | 55,588,321 | SNP | A/T | rs35356088 (DbSNP) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.