OR10W1 Olfactory Receptor
| Gene Symbol | OR10W11 (View this gene in GeneCards) |
| Family | 10 |
| Subfamily | W |
| Pseudogene | No |
| CORP pseudogene probability score | 0.13 (functional) |
| Aliases | OR11-236, HsOR11.12.12 |
| External Ids | HGNC: 15139 GeneBank: AB065850, AY358251, BK004490, NG_004246, NM_207374 |
| Build #39 labels | OR10W1P |
| Chromosomal location | 11:58,266,944-58,267,858 (-) |
| Cluster | 11@58 |
| Synteny | CLIC#27 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR10Q1 | 53.64% | 302 |
| OR10Q2P | 56.85% | 292 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR10Q1 | 55% | 292 |
| Mouse | Or10w1 | 81% | 304 |
| Rat | Or10w1 | 80% | 304 |
| Cow | OR10W4 | 76% | 305 |
| Orang | OR10Q2P | 54% | 304 |
| Horse | OR10W5P | 77% | 305 |
| Chimp | OR10W1P | 96% | 305 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AB529287 |
| GNF Atlas2 | gnf1h02104_s_at |
Sequence information
| Nucleotide sequence |
ATGGAATTTGTGTTCCTGGCCTATCCCTCCTGCCCAGAACTGCATATTCTGTCCTTCCTT GGGGTCAGCCTGGTTTATGGTTTGATCATCACTGGGAACATTCTCATTGTGGTGTCCATT CACACAGAAACCTGTCTATGCACATCCATGTACTATTTCCTGGGCAGCCTTTCTGGGATT GAAATATGCTACACTGCAGTGGTGGTGCCCCATATCCTGGCCAACACCCTACAGTCAGAG AAGACCATCACTCTCCTGGGCTGTGCCACCCAGATGGCTTTCTTCATTGCACTGGGCAGT GCTGATTGCTTCCTCTTGGCTGCCATGGCCTATGACCGCTATGTGGCCATTTGCCACCCG TTGCAGTACCCTCTCCTCATGACATTGACTCTTTGTGTCCACTTGGTTGTGGCATCAGTC ATCAGTGGTCTGTTCCTGTCCTTACAACTGGTGGCCTTCATCTTCTCTCTGCCATTCTGC CAGGCTCAGGGCATTGAGCACTTCTTTTGTGATGTGCCACCAGTCATGCATGTTGTTTGT GCTCAGAGTCACATTCATGAGCAGTCAGTGCTGGTGGCAGCCATACTAGCCATTGCTGTG CCTTTCTTCCTCATCACCACCTCCTACACCTTCATAGTGGCTGCTCTGCTCAAGATCCAC TCGGCTGCTGGCCGCCACCGGGCCTTCTCCACCTGCTCTTCCCACCTCACTGTGGTGCTG CTGCAGTATGGCTGCTGTGCCTTCATGTACCTGTGCCCCAGCTCCAGCTACAACCCCAAG CAAGATCGGTTCATCTCACTGGTGTACACATTGGGAACCCCACTGCTCAACCCACTTATC TATGCCCTGAGGAACAGTGAGATGAAAGGGGCCGTAGGGAGAGTTCTTACCAGGAACTGC CTTTCCCAGAACAGC |
| Conceptual translation |
MEFVFLAYPSCPELHILSFLGVSLVYGLIITGNILIVVSIHTETCLCTSMYYFLGSLSGI EICYTAVVVPHILANTLQSEKTITLLGCATQMAFFIALGSADCFLLAAMAYDRYVAICHP LQYPLLMTLTLCVHLVVASVISGLFLSLQLVAFIFSLPFCQAQGIEHFFCDVPPVMHVVC AQSHIHEQSVLVAAILAIAVPFFLITTSYTFIVAALLKIHSAAGRHRAFSTCSSHLTVVL LQYGCCAFMYLCPSSSYNPKQDRFISLVYTLGTPLLNPLIYALRNSEMKGAVGRVLTRNC LSQNS Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | NS | C/T | R/Q | 1000GP (YRI, YRI, YRI, YRI) |
| 11 | 100 | -100 | SYN | G/A | F/F | 1000GP (YRI) |
| 11 | 58,034,543 | 58,034,543 | NS | C/T | R/Q | rs10792156 (DbSNP) |
| 11 | 58,034,597 | 58,034,597 | NS | C/G | C/S | rs56302613 (DbSNP) |
| 11 | 58,034,635 | 58,034,635 | NS | T/G | multi/C | rs61998229 (DbSNP) |
| 11 | 58,034,651 | 58,034,651 | NS | C/T | R/Q | rs7111538 (DbSNP) |
| 11 | 58,034,722 | 58,034,722 | SYN | A/G | F/F | rs12284213 (DbSNP) |
| 11 | 58,267,071 | 58,267,071 | NS | C/T | R/Q | 1000GP (CEU, CHBJPT) |
| 11 | 58,267,179 | 58,267,179 | NS | C/T | R/Q | 1000GP (CEU) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 187 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| R263Q | D262Y | % Freq | CORP | |
|---|---|---|---|---|
| 1 | R | D | 50.00 | 0.313 |
| 2 | Q | D | 49.92 | 0.313 |
| 3 | Q | Y | 0.08 | 0.313 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR10W1.aApr07-unspliced | main_exon | 3UTR | chr11 | 58,266,792 | 58,266,944 | - |
| CDS | chr11 | 58,266,944 | 58,267,858 | - | ||
| 5UTR | chr11 | 58,267,858 | 58,268,260 | - | ||