OR10Z1 Olfactory Receptor
Gene Symbol | OR10Z11 (View this gene in GeneCards) |
Family | 10 |
Subfamily | Z |
Pseudogene | No |
CORP pseudogene probability score | 0.15 (functional) |
Aliases | OR1-15, HsOR1.4.10, ORL3004 |
External Ids | HGNC: 14996 GeneBank: AB065635, BK004195, NM_001004478 ORDB: ORL3004 |
Build #39 labels | OR10Z1 |
Chromosomal location | 1:158,606,439-158,607,377 (+) |
Cluster | 1@159a |
Synteny | CLIC#4 |
Remarks |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR10R2 | 54.22% | 308 |
OR10R3P | 54.87% | 308 |
OR10T1P | 52.58% | 310 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR10J7 | 55% | 312 |
Mouse | Or10z1 | 88% | 313 |
Rat | Or10z1 | 86% | 313 |
Cow | OR10R2 | 55% | 308 |
Orang | OR10Z1BP | 81% | 341 |
Horse | OR10R3 | 54% | 312 |
Chimp | OR10R2 | 55% | 308 |
Expression evidences
Source | Accession |
---|---|
mRNA | AB529288 |
GNF Atlas2 | gnf1h01972_at |
Sequence information
Nucleotide sequence |
ATGGGGCAGACCAACGTAACCTCCTGGAGGGATTTTGTCTTCCTGGGCTTCTCCAGTTCT GGGGAGTTGCAGCTCCTTCTCTTTGCCTTGTTCCTCTCTCTGTATCTAGTCACTCTGACC AGCAATGTCTTCATTATCATAGCCATCAGGCTGGATAGCCATCTGCACACCCCCATGTAC CTCTTCCTTTCCTTCCTATCCTTCTCTGAGACCTGCTACACTTTGGGCATCATCCCTAGA ATGCTCTCTGGCCTGGCTGGGGGGGACCAGGCTATCTCCTATGTGGGCTGTGCTGCCCAG ATGTTCTTTTCTGCCTCATGGGCCTGTACTAACTGCTTCCTTCTGGCTGCCATGGGCTTT GACAGATATGTGGCCATCTGTGCTCCACTCCACTATGCCAGCCACATGAATCCTACCCTC TGTGCCCAGCTGGTCATTACTTCCTTCCTGACTGGATACCTCTTTGGACTGGGAATGACA CTAGTTATTTTCCACCTCTCATTCTGCAGCTCCCATGAAATCCAGCACTTTTTTTGTGAC ACGCCACCTGTGCTGAGCCTAGCCTGTGGAGATACAGGCCCGAGTGAGCTGAGGATCTTT ATCCTCAGTCTTTTGGTCCTCTTGGTCTCCTTCTTCTTCATCACCATCTCCTACGCCTAC ATCTTGGCAGCAATACTGAGGATCCCCTCTGCTGAGGGGCAGAAGAAGGCCTTCTCCACT TGTGCCTCGCACCTTACAGTGGTCATTATTCATTATGGCTGTGCTTCCTTCGTGTACCTG AGGCCCAAAGCCAGCTACTCTCTTGAGAGAGATCAGCTTATTGCCATGACCTATACTGTA GTGACCCCCCTCCTTAATCCCATTGTTTATAGTCTAAGGAATAGGGCTATACAGACAGCT CTGAGGAATGCTTTCAGAGGGAGATTGCTGGGTAAAGGA |
Conceptual translation |
MGQTNVTSWRDFVFLGFSSSGELQLLLFALFLSLYLVTLTSNVFIIIAIRLDSHLHTPMY LFLSFLSFSETCYTLGIIPRMLSGLAGGDQAISYVGCAAQMFFSASWACTNCFLLAAMGF DRYVAICAPLHYASHMNPTLCAQLVITSFLTGYLFGLGMTLVIFHLSFCSSHEIQHFFCD TPPVLSLACGDTGPSELRIFILSLLVLLVSFFFITISYAYILAAILRIPSAEGQKKAFST CASHLTVVIIHYGCASFVYLRPKASYSLERDQLIAMTYTVVTPLLNPIVYSLRNRAIQTA LRNAFRGRLLGKG Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
1 | 100 | -100 | NS | C/A | H/N | 1000GP (YRI, YRI, YRI) |
1 | 100 | -100 | SYN | / | G/G | 1000GP (YRI) |
1 | 158,576,712 | 158,576,712 | NS | G/T | V/F | rs28565358 (DbSNP) |
1 | 158,576,973 | 158,576,973 | NS | A/G | I/V | rs41273513 (DbSNP) |
1 | 158,577,109 | 158,577,109 | NS | A/C | N/T | rs857685 (DbSNP) |
1 | 158,577,167 | 158,577,167 | SYN | A/T | G/G | rs2427808 (DbSNP) |
1 | 158,607,183 | 158,607,183 | NS | A/G | I/V | 1000GP (CEU) |
1 | 158,607,319 | 158,607,319 | NS | A/C | N/T | 1000GP (CEU, CHBJPT) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
H56N | L82F | G87V | Y153* | V162F | I249V | N294T | % Freq | CORP | |
---|---|---|---|---|---|---|---|---|---|
1 | H | L | G | Y | V | I | N | 70.05 | 0.253 |
2 | H | L | G | Y | V | I | T | 23.81 | 0.253 |
3 | H | F | G | Y | V | I | N | 2.84 | 0.203 |
4 | H | L | G | * | V | I | N | 1.54 | 1.200 |
5 | H | L | G | Y | V | V | N | 0.77 | 0.253 |
6 | H | L | G | Y | F | I | N | 0.46 | 0.253 |
7 | N | L | G | Y | V | I | N | 0.38 | 0.253 |
8 | H | L | G | Y | V | V | T | 0.08 | 0.253 |
9 | H | L | V | Y | V | I | N | 0.08 | 0.253 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
Accession | Type | Chr | Start | End | Strand | |
---|---|---|---|---|---|---|
OR10Z1.aApr07-unspliced | main_exon | CDS | chr1 | 158,606,439 | 158,607,377 | + |
3UTR | chr1 | 158,607,377 | 158,607,380 | + |