OR11H13P Olfactory Receptor
| Gene Symbol | OR11H13P1 (View this gene in GeneCards) |
| Family | 11 |
| Subfamily | H |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | |
| External Ids | HGNC: 29997 |
| Build #39 labels | |
| Chromosomal location | 14:19,180,323-19,181,252 (-) |
| Cluster | 14@20a |
| Synteny | CLIC#0 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR11H12 | 95.16% | 310 |
| OR11H2 | 95.48% | 310 |
| OR11H1 | 95.16% | 310 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR11H12 | 82% | 310 |
| Mouse | Or11h6 | 65% | 298 |
| Rat | Or11h4d | 63% | 307 |
| Cow | OR11H12 | 83% | 310 |
| Cow | OR11H12B | 82% | 310 |
| Orang | OR11H12 | 92% | 310 |
| Orang | OR11H12D | 90% | 310 |
| Orang | OR11H12CP | 90% | 310 |
| Horse | OR11H12 | 86% | 310 |
| Chimp | OR11H12 | 95% | 310 |
Sequence information
| Nucleotide sequence |
ATGAATGTCTCTGAGCCAAATTCCAGCTTTGCTTTTGTAAATGAATTTATACTCCAAGGT TTCTCTTGTGAGTGGACAATTCAGATCTTCCTCTTCTCACTCTTTACTACAATATATGCA CTGACTATAACAGGGAATGGAGCCATTGCTTTTGCCCTGTGGTGTGACCGGCGACTTCAC ACTCCCATGTACATGTTCCTGGGAGATTTCTCCTTTTTAGAGATATGGTATGTCTTTTCT ACAGTTCCCAAGATGTTGGTCAACTTCCTTTCAGAGAAAACAAACATCTCCTTTGCTGGA TTGTTTTCTCCAGTTTTATTTCTTCTTCTCTTTGGGTACATCAGAATGCTTGCTTTTGAC TGTGATGGCCTTTGATCAGTACCTTGCTATCTGCCGTCCCTTGCACTATCCTAATATCAT GACTGGGCATCTCTGTGCCAAACTGGTCATACTGTGCTGGGTTTGTGGCTTTCTGTGGTT CCTGATCCCCATTTTCTCATCTCTCAGATGCCCTTCTGTGGCCCAAACATTATTGACCAT GTTGTGTGTGACCCAGGGCCACTATTTGCATTGGATTGTGTTTCTGCCCCAAGAATCCAA CTGTTTTGCTACACTCTAAGCTCATTAGTTATTTTTGGTAACTTCCTCTTTATTATTGGA TCCTATACTATTGTCCTGAAAGTTGTGTTGGGTACGCCTTCAAGCACTGGGAGACATAAG GCCTTCTCTACCTGTGGGTCTCATTTGGCTGTGGTATCACTGTGCTATGGCTCTCTTATG GTCATGTATGTGAGCCCAGGACTCGGACATTCTACGGGGATGCAGAAAATTGTAACTTTG TTCTATGCTATGGTGACCCCACTCTTCAATCCCCTTATCTATAGCCTCCAGAATAAGGAG ATAAAGGCAGCCCTGAGGAAAGTTCTGGGG |
| Conceptual translation |
MNVSEPNSSFAFVNEFILQGFSCEWTIQIFLFSLFTTIYALTITGNGAIAFALWCDRRLH TPMYMFLGDFSFLEIWYVFSTVPKMLVNFLSEKTNISFAG\FLQFYFFFSLGTSECLLL TVMAFDQYLAICRPLHYPNIMTGHLCAKLVILCWVCGFLWFLIP/FLISQMPFCGPNII DHVVCDPGPLFALDCVSAPRIQLFCYTLSSLVIFGNFLFIIGSYTIVLKVVLGTPSSTGR HKAFSTCGSHLAVVSLCYGSLMVMYVSPGLGHSTGMQKIVTLFYAMVTPLFNPLIYSLQN KEIKAALRKVLG Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 14 | 19,807,082 | 19,807,082 | Del(1) | -/A | rs59504060 (DbSNP) | |
| 14 | 19,806,890 | 19,806,889 | Ins(1) | -/C | rs55647936 (DbSNP) | |
| 14 | 19,806,717 | 19,806,717 | SNP | A/C | rs1575832 (DbSNP) | |
| 14 | 19,807,147 | 19,807,147 | SNP | A/C | rs28448795 (DbSNP) | |
| 14 | 19,806,568 | 19,806,568 | SNP | A/G | rs56398359 (DbSNP) | |
| 14 | 19,806,758 | 19,806,758 | SNP | A/G | rs28622122 (DbSNP) | |
| 14 | 19,806,785 | 19,806,785 | SNP | A/G | rs28372158 (DbSNP) | |
| 14 | 19,806,700 | 19,806,700 | SNP | A/G | rs4111007 (DbSNP) | |
| 14 | 19,807,270 | 19,807,270 | SNP | A/G | rs2713379 (DbSNP) | |
| 14 | 19,806,996 | 19,806,996 | SNP | A/G | rs57737111 (DbSNP) | |
| 14 | 19,807,228 | 19,807,228 | SNP | A/G | rs2260153 (DbSNP) | |
| 14 | 19,806,635 | 19,806,635 | SNP | C/T | rs59963194 (DbSNP) | |
| 14 | 19,806,763 | 19,806,763 | SNP | C/T | rs55751436 (DbSNP) | |
| 14 | 19,806,687 | 19,806,687 | SNP | C/T | rs56256752 (DbSNP) | |
| 14 | 19,807,008 | 19,807,008 | SNP | C/T | rs61969442 (DbSNP) | |
| 14 | 19,807,178 | 19,807,178 | SNP | C/T | rs2260154 (DbSNP) | |
| 14 | 19,806,972 | 19,806,972 | SNP | G/A | rs4982557 (DbSNP) | |
| 14 | 19,806,914 | 19,806,914 | SNP | G/T | rs1853905 (DbSNP) | |
| 14 | 19,806,652 | 19,806,652 | SNP | G/T | rs61969439 (DbSNP) | |
| 14 | 19,806,525 | 19,806,525 | SNP | G/T | rs28565980 (DbSNP) | |
| 14 | 19,180,527 | 19,180,527 | SNP | C/T | 1000GP (CEU) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 14 | 19,662,531 | 20,556,187 | CopyNumber | Variation_3929 (DGV) |
| 14 | 19,592,310 | 19,917,252 | CopyNumber | Variation_4822 (DGV) |
| 14 | 19,117,183 | 20,424,605 | CopyNumber | Variation_7028 (DGV) |
| 14 | 19,360,239 | 20,424,604 | CopyNumber | Variation_31953 (DGV) |
| 14 | 19,467,960 | 20,065,372 | Inversion | Variation_37153 (DGV) |
| 14 | 19,723,859 | 19,811,996 | Inversion | Variation_37154 (DGV) |
| 14 | 19,670,757 | 20,331,117 | CopyNumber | Variation_37621 (DGV) |
| 14 | 19,349,922 | 20,424,856 | CopyNumber | Variation_58655 (DGV) |
| 14 | 19,781,170 | 20,424,776 | CopyNumber | Variation_71833 (DGV) |
| 14 | 19,781,372 | 19,815,955 | CopyNumber | Variation_71844 (DGV) |
| 14 | 19,676,917 | 19,864,216 | CopyNumber | Variation_71853 (DGV) |
| 14 | 19,802,555 | 19,815,955 | CopyNumber | Variation_71854 (DGV) |
| 14 | 19,780,325 | 20,202,019 | CopyNumber | Variation_71861 (DGV) |
| 14 | 19,803,217 | 19,837,177 | CopyNumber | Variation_76542 (DGV), Variation_87099 (DGV) |
| 14 | 19,803,217 | 19,813,348 | CopyNumber | Variation_87102 (DGV) |
| 14 | 19,803,217 | 19,817,972 | CopyNumber | Variation_87103 (DGV) |
| CopyNumber | 38 (Hasin) | |||
| 14 | 19,804,453 | 19,807,482 | CopyNumber | #171 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.