OR11J2P Olfactory Receptor
| Gene Symbol | OR11J2P1 (View this gene in GeneCards) |
| Family | 11 |
| Subfamily | J |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR15-11, HsOR15.1.1P, ORL3733 |
| External Ids | HGNC: 15370 GeneBank: AK027771, BK004778, NG_004164 ORDB: ORL3733 |
| Build #39 labels | OR11J2P |
| Chromosomal location | 15:20,960,661-20,961,606 (+) |
| Cluster | 15@21 |
| Synteny | CLIC#0 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR11J1P | 70.92% | 306 |
| OR11J5P | 70.92% | 306 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR11J6 | 74% | 304 |
| Mouse | Or11j4 | 63% | 302 |
| Rat | Or11j4 | 63% | 302 |
| Cow | OR11J12 | 79% | 309 |
| Orang | OR11G2 | 60% | 293 |
| Horse | OR11J2 | 81% | 310 |
| Chimp | OR11J5P | 73% | 305 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AK027771 |
Sequence information
| Nucleotide sequence |
GTGAGGACCTTGGAGACTACTAATATCACTGGATTTGTGAATGAGTTCATCCTCTTGGGC TTCCCCTGCCGCTGGGAGATCCAGATCCTCCTTTTTGTGGTCTTCTCTCTCATCTACCTT CTGACCCTCCTAGGTAACACATCCATCATCTGTGCTGTGTGGTCAAGCCAGAAACTCCAC ACACCTATGTACATCCTACTGGCCAATTTCTCCTTCCTGGAGATCTGCTGTGTCAGTTCT GACGTGCCCATAATGGCAGCCAATCTCATCTCCCAGACACAGAGCATCTCCTGTGCTGGC TGCCTGCTCCGGTTCTACTTCTTCTCCATGTGTGCTGCAGAGTGCTTATTTCTGTCAGTG ATGTCTTTTGATAGGTTTCCTGCCATTTGTAGACCTTTGCACTATCCCACCTTAATGACC CATCACGTTTGTGCTCATTTTTGTGATCTTCTGCTGGGTGGGTGGCTGTCTCTGGTTATT GACCCCTTTGACACTAATATCTCAGGTGCTCTTTTGTGGTCCAAACACTATCGACCATTT TTTCTGTGATCTGGCACCTTTGCTGGCACTGTCTTGTGCTCCAATACCTGGAATTACTCT GACTTGTGGTATCATTAGCGCTCTCATCATCTTTCTTACCTTCTTGTATATCCTTGGGAC TTATTTCTGTGTTCTAAGCACAGTGCTACAGGTGCCTTCAGGCTTAGGAAGGCATAAGGC TTTCTCAACTTGTGGCTGTCACCTTGCTGTAGTGTCTCTCTTCTATGGTTCTCTTATGGT GATGTATGTTAGCCCAGGTTCTGGGGACTATCATGGGATAAAGAAATTTGCGACCTTGTT CTATACTTTGTCAACTCCATTCTTTAATCCTCTGATCTACAGTTTCCGGAACAAGGATAT GAAAGAGGCACTAAAGAAATTTCTGAGGAATCGCCACACTGTCGAT |
| Conceptual translation |
VRTLETTNITGFVNEFILLGFPCRWEIQILLFVVFSLIYLLTLLGNTSIICAVWSSQKLH TPMYILLANFSFLEICCVSSDVPIMAANLISQTQSISCAGCLLRFYFFSMCAAECLFLSV MSFDRFPAICRPLHYPTLMTHHVC\IFVIFCWVGGCLWLLTPLTLISQVLFCGPNTIDH FFCDLAPLLALSCAPIPGITLTCGIISALIIFLTFLYILGTYFCVLSTVLQVPSGLGRHK AFSTCGCHLAVVSLFYGSLMVMYVSPGSGDYHGIKKFATLFYTLSTPFFNPLIYSFRNKD MKEALKKFLRNRHTVD Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 15 | 21,166,015 | 21,166,015 | SNP | T/C | rs2664966 (DbSNP) | |
| 15 | 21,166,028 | 21,166,028 | SNP | G/A | rs2664965 (DbSNP) | |
| 15 | 21,166,062 | 21,166,062 | SNP | A/T | rs3852650 (DbSNP) | |
| 15 | 21,166,121 | 21,166,121 | SNP | A/G | rs3852649 (DbSNP) | |
| 15 | 21,166,128 | 21,166,128 | SNP | A/G | rs8039885 (DbSNP) | |
| 15 | 21,166,301 | 21,166,301 | SNP | A/G | rs10902984 (DbSNP) | |
| 15 | 21,166,309 | 21,166,309 | SNP | A/T | rs60384284 (DbSNP) | |
| 15 | 21,166,369 | 21,166,369 | SNP | C/T | rs8039649 (DbSNP) | |
| 15 | 21,166,427 | 21,166,427 | Del(1) | -/T | rs66673716 (DbSNP) | |
| 15 | 21,166,431 | 21,166,431 | Del(1) | -/T | rs67188104 (DbSNP) | |
| 15 | 21,166,497 | 21,166,497 | SNP | C/G | rs2664964 (DbSNP) | |
| 15 | 21,166,533 | 21,166,532 | Ins(1) | -/A | rs71226095 (DbSNP) | |
| 15 | 21,166,552 | 21,166,552 | SNP | A/C | rs74006143 (DbSNP) | |
| 15 | 21,166,608 | 21,166,608 | SNP | C/T | rs3852648 (DbSNP) | |
| 15 | 21,166,613 | 21,166,614 | Del(2) | -/TC | rs68007443 (DbSNP) | |
| 15 | 21,166,619 | 21,166,619 | SNP | C/T | rs8024691 (DbSNP) | |
| 15 | 21,166,765 | 21,166,765 | SNP | A/G | rs11248686 (DbSNP) | |
| 15 | 21,166,820 | 21,166,820 | SNP | C/T | rs2626170 (DbSNP) | |
| 15 | 21,166,859 | 21,166,859 | SNP | A/C | rs12593385 (DbSNP) | |
| 15 | 21,166,886 | 21,166,886 | SNP | A/G | rs12437447 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 236 (Hasin) | |||
| 15 | 20,003,725 | 23,814,757 | CopyNumber | Variation_3951 (DGV) |
| 15 | 20,143,651 | 23,690,892 | CopyNumber | Variation_3070 (DGV) |
| 15 | 20,161,372 | 22,351,239 | CopyNumber | Variation_49466 (DGV) |
| 15 | 20,161,372 | 22,368,110 | CopyNumber | Variation_49467 (DGV) |
| 15 | 20,161,372 | 22,449,059 | CopyNumber | Variation_49468 (DGV), Variation_49469 (DGV) |
| 15 | 20,161,372 | 22,755,185 | CopyNumber | Variation_49470 (DGV) |
| 15 | 20,161,372 | 23,226,254 | CopyNumber | Variation_49471 (DGV) |
| 15 | 20,167,086 | 21,200,251 | CopyNumber | Variation_8780 (DGV), Variation_34562 (DGV) |
| 15 | 20,167,086 | 22,588,036 | CopyNumber | Variation_8779 (DGV) |
| 15 | 20,167,086 | 22,862,959 | CopyNumber | Variation_34576 (DGV) |
| 15 | 20,167,086 | 22,869,764 | CopyNumber | Variation_8781 (DGV) |
| 15 | 20,167,086 | 23,222,284 | CopyNumber | Variation_9251 (DGV), Variation_34504 (DGV) |
| 15 | 20,167,086 | 23,854,707 | CopyNumber | Variation_8784 (DGV) |
| 15 | 20,167,089 | 21,200,251 | CopyNumber | Variation_9253 (DGV) |
| 15 | 20,167,089 | 22,588,036 | CopyNumber | Variation_9250 (DGV) |
| 15 | 20,167,089 | 22,869,763 | CopyNumber | Variation_34665 (DGV) |
| 15 | 20,167,089 | 23,222,284 | CopyNumber | Variation_34608 (DGV) |
| 15 | 20,171,787 | 22,646,418 | CopyNumber | Variation_31980 (DGV) |
| 15 | 20,198,198 | 22,591,284 | CopyNumber | Variation_30670 (DGV) |
| 15 | 20,266,957 | 22,674,466 | CopyNumber | Variation_0318 (DGV) |
| 15 | 20,397,403 | 22,698,551 | CopyNumber | Variation_7046 (DGV) |
| 15 | 20,422,586 | 22,588,019 | CopyNumber | Variation_34663 (DGV) |
| 15 | 20,541,678 | 22,368,898 | CopyNumber | Variation_58702 (DGV) |
| 15 | 20,550,037 | 21,200,759 | CopyNumber | Variation_38976 (DGV) |
| 15 | 20,586,927 | 21,200,251 | CopyNumber | Variation_9255 (DGV) |
| 15 | 20,610,110 | 22,575,858 | Inversion | Variation_0443 (DGV) |
| 15 | 20,625,544 | 22,559,977 | Inversion | Variation_0444 (DGV) |
| 15 | 20,784,852 | 21,398,778 | CopyNumber | Variation_72142 (DGV) |
| 15 | 20,835,037 | 21,191,658 | CopyNumber | Variation_59597 (DGV) |
| 15 | 20,851,594 | 22,588,036 | CopyNumber | Variation_34545 (DGV) |
| 15 | 20,852,150 | 23,222,284 | CopyNumber | Variation_8785 (DGV) |
| 15 | 20,879,638 | 22,777,875 | CopyNumber | Variation_9254 (DGV) |
| 15 | 20,935,075 | 22,777,875 | CopyNumber | Variation_8783 (DGV) |
| 15 | 21,012,524 | 23,222,284 | CopyNumber | Variation_9256 (DGV) |
| 15 | 21,040,509 | 21,203,278 | CopyNumber | Variation_4871 (DGV) |
| 15 | 21,054,356 | 21,177,694 | CopyNumber | Variation_87465 (DGV) |
| 15 | 21,054,356 | 21,288,901 | CopyNumber | Variation_87466 (DGV) |
| 15 | 21,054,356 | 21,301,403 | CopyNumber | Variation_76818 (DGV) |
| 15 | 21,054,356 | 22,453,425 | CopyNumber | Variation_76814 (DGV), Variation_87462 (DGV) |
| 15 | 21,072,035 | 22,588,019 | CopyNumber | Variation_34607 (DGV) |
| 15 | 21,074,457 | 21,283,596 | CopyNumber | Variation_72130 (DGV) |
| 15 | 21,077,038 | 21,168,392 | CopyNumber | Variation_102041 (DGV) |
| 15 | 21,097,124 | 22,449,059 | CopyNumber | Variation_9742 (DGV) |
| 15 | 21,146,888 | 21,241,912 | CopyNumber | Variation_72121 (DGV) |
| 15 | 21,163,006 | 21,166,495 | CopyNumber | Variation_63050 (DGV) |
| 15 | 21,165,890 | 21,168,935 | CopyNumber | #174 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.