OR13A1 Olfactory Receptor
| Gene Symbol | OR13A11 (View this gene in GeneCards) |
| Family | 13 |
| Subfamily | A |
| Pseudogene | No |
| CORP pseudogene probability score | 0.03 (functional) |
| Aliases | OR10-3, HsOR10.2.2, ORL3265 |
| External Ids | HGNC: 14772 GeneBank: AB065728, BK004287 ORDB: ORL3265 |
| Build #39 labels | OR13A1 |
| Chromosomal location | 10:45,303,439-45,304,365 (-) |
| Cluster | 10@46 |
| Synteny | CLIC#22 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR1F1 | 45.18% | 301 |
| OR1F12 | 46.15% | 299 |
| OR5V1 | 47% | 300 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR12J1 | 59% | 303 |
| Mouse | Or13a1 | 85% | 309 |
| Rat | Or13a1 | 83% | 308 |
| Cow | OR13A29 | 65% | 301 |
| Orang | OR13G1 | 50% | 308 |
| Horse | OR13A29 | 66% | 307 |
| Chimp | OR13G1 | 50% | 306 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | DB053156 |
| mRNA | AB463955 |
| GNF Atlas2 | gnf1h10899_at |
Sequence information
| Nucleotide sequence |
ATGATGAGTAACCAGACGTTGGTAACCGAGTTCATCCTGCAGGGCTTTTCGGAGCACCCA GAATACCGGGTGTTCTTATTCAGCTGTTTCCTCTTCCTCTACTCTGGGGCCCTCACAGGT AATGTCCTCATCACCTTGGCCATCACGTTCAACCCTGGGCTCCACGCTCCTATGTACTTT TTCTTACTCAACTTGGCTACTATGGACATTATCTGCACCTCTTCCATCATGCCCAAGGCG CTGGCCAGTCTGGTGTCGGAAGAGAGCTCCATCTCCTACGGGGGCTGCATGGCCCAGCTC TATTTCCTCACGTGGGCTGCATCCTCAGAGCTGCTGCTCCTCACGGTCATGGCCTATGAC CGGTACGCAGCCATCTGCCACCCGCTGCATTACAGCAGCATGATGAGCAAGGTGTTCTGC AGCGGGCTGGCCACAGCCGTGTGGCTGCTCTGCGCCGTCAACACGGCCATCCACACGGGG CTGATGCTGCGCTTGGATTTCTGTGGCCCCAATGTCATTATCCATTTCTTCTGCGAGGTC CCTCCCCTGCTGCTTCTCTCCTGCAGCTCCACCTACGTCAACGGTGTCATGATTGTCCTG GCGGATGCTTTCTACGGCATAGTGAACTTCCTGATGACCATCGCGTCCTATGGCTTCATC GTCTCCAGCATCCTGAAGGTGAAGACTGCCTGGGGGAGGCAGAAAGCCTTCTCCACCTGC TCTTCCCACCTCACCGTGGTGTGCATGTATTACACCGCTGTCTTCTACGCCTACATAAGC CCGGTCTCTGGCTACAGCGCAGGGAAGAGCAAGTTGGCTGGCCTGCTGTACACTGTGCTG AGTCCTACCCTCAACCCCCTCATCTATACTTTGAGAAACAAGGAGGTCAAAGCAGCCCTC AGGAAGCTTTTCCCTTTCTTCAGAAAT |
| Conceptual translation |
MMSNQTLVTEFILQGFSEHPEYRVFLFSCFLFLYSGALTGNVLITLAITFNPGLHAPMYF FLLNLATMDIICTSSIMPKALASLVSEESSISYGGCMAQLYFLTWAASSELLLLTVMAYD RYAAICHPLHYSSMMSKVFCSGLATAVWLLCAVNTAIHTGLMLRLDFCGPNVIIHFFCEV PPLLLLSCSSTYVNGVMIVLADAFYGIVNFLMTIASYGFIVSSILKVKTAWGRQKAFSTC SSHLTVVCMYYTAVFYAYISPVSGYSAGKSKLAGLLYTVLSPTLNPLIYTLRNKEVKAAL RKLFPFFRN Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 10 | 100 | -100 | NS | G/A | A/V | 1000GP (YRI, YRI, YRI, YRI) |
| 10 | 100 | -100 | SYN | A/G | S/S | 1000GP (YRI) |
| 10 | 45,798,918 | 45,798,918 | NS | A/G | V/A | rs60779198 (DbSNP) |
| 10 | 45,799,066 | 45,799,065 | Ins(1) | -/A | rs35302355 (DbSNP) | |
| 10 | 45,799,195 | 45,799,195 | NS | C/T | V/I | rs73281136 (DbSNP) |
| 10 | 45,799,451 | 45,799,451 | SYN | C/T | R/R | rs17157674 (DbSNP) |
| 10 | 45,799,592 | 45,799,592 | SYN | A/G | S/S | rs11239431 (DbSNP) |
| 10 | 45,799,679 | 45,799,679 | SYN | A/G | T/T | rs7350388 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 82 (Hasin) | |||
| 10 | 45,550,145 | 45,820,136 | CopyNumber | Variation_9148 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| A318V | I226V | G113R | % Freq | CORP | |
|---|---|---|---|---|---|
| 1 | A | I | G | 89.94 | 0.093 |
| 2 | A | V | G | 4.60 | 0.093 |
| 3 | A | I | R | 4.02 | 0.093 |
| 4 | V | I | G | 1.44 | 0.093 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR13A1.aApr07 | main_exon | 3UTR | chr10 | 45,303,358 | 45,303,439 | - |
| CDS | chr10 | 45,303,439 | 45,304,365 | - | ||
| 5UTR | chr10 | 45,304,365 | 45,304,500 | - | ||
| exon_5UTR | chr10 | 45,307,426 | 45,307,459 | - | ||
| OR13A1.bApr07 | main_exon | 3UTR | chr10 | 45,302,654 | 45,303,439 | - |
| CDS | chr10 | 45,303,439 | 45,304,365 | - | ||
| 5UTR | chr10 | 45,304,365 | 45,304,434 | - | ||
| exon_5UTR | chr10 | 45,307,426 | 45,307,567 | - | ||
| exon_5UTR | chr10 | 45,307,739 | 45,307,808 | - | ||
| exon_5UTR | chr10 | 45,315,524 | 45,315,607 | - | ||