OR13C1P Olfactory Receptor
| Gene Symbol | OR13C1P1 (View this gene in GeneCards) |
| Family | 13 |
| Subfamily | C |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR9-14, HsOR9.4.10P, ORL3248 |
| External Ids | HGNC: 14699 GeneBank: AF399464, BK004729, NG_002246 ORDB: ORL3248 |
| Build #39 labels | OR13C1P |
| Chromosomal location | 9:104,656,757-104,657,716 (-) |
| Cluster | 9@107 |
| Synteny | CLIC#19 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR13C3 | 70.06% | 314 |
| OR13C6P | 71.79% | 319 |
| OR13C7P | 74.53% | 318 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR13C1 | 90% | 320 |
| Mouse | Or13c7 | 76% | 319 |
| Rat | Or13c7 | 77% | 315 |
| Cow | OR13C1 | 89% | 319 |
| Orang | OR13C6 | 72% | 319 |
| Horse | OR13C1 | 90% | 319 |
| Chimp | OR13C1 | 97% | 320 |
Sequence information
| Nucleotide sequence |
ATGGGAAACTCTAATCAGTCTTTCATGACAGAATTTGTCCTGCTGGGGCTTTCTGGCTAC CCAGAGCTAGAGGCCATTTACTTTGTGCTGGTCCTATGTATGTATTTGGTGATCCTGTTG GGAAATGGAGTCATCATCATTGTGAGTGTTTATGACACCCACTTGCACACCCCCATGTAC TTTTTCCTCAGTAACTTATCATTCTTGGACATCTGCTACACTAGTTCATCTATTCCACTA TTTCTCAGCAGCTTCTTAACGTCAAAGAAAACTATTTCCTTCTCTGGGTGTGGAGTGCAA ATGTTTCTCTCTTTTGCTATGGGAGCAACAGAGTGTGTCCTTCTAAGTATGATGGCGTTT GACTGCTATGTGGCCATCTGTAACCCTCTATGATACCCTATCATCATGAGCAAGGCTTCA TACATGTCCATGGCTGCGGGGTCCTGGATTGGAGGAGGCATCAATTCTGTGTTGCAAACC TCCCTTGCAATGCGGCTTCCTTTCTGTGGAGATAACGTCATTAATCATTTTACTTGTGAA ATCTTGGCTGTCTTAAAATTGGCCTGTGCTAATATCTCCATAAATATTATTAGCATGGTT GTTGCTAGTATGATTTTTCTTGTAGGGCCAGTACTTTTTATTTTTGTTACATATGTTTTT ATTCTCTCCACCATCCTGAGAATTCCTTCTGCAGAAGGAAGGCACAAAGCCTCCTCCACC TGCTCTGCCCACCTAACAGTGGTGATTATATTCTACAGAACCATCCTTTTCATGTATGCA AAGCCCAAGGCTAAAGACTCTTCTGGTGCAGACAAAGAACAAGTCACAGACAAAATCATC TCCCTGTTCTATGGAGTGGTGACACCTATGCTTAATCCTCTTATCTATAGTTTGAGGAAC AAAGACGTGAAGGCAGCTGTGAAGAGTATACTGTGACAAAAATGCTTCTTGGAAGGAATT |
| Conceptual translation |
MGNSNQSFMTEFVLLGLSGYPELEAIYFVLVLCMYLVILLGNGVIIIVSVYDTHLHTPMY FFLSNLSFLDICYTSSSIPLFLSSFLTSKKTISFSGCGVQMFLSFAMGATECVLLSMMAF DCYVAICNPLXPIIMSKASYMSMAAGSWIGGGINSVLQTSLAMRLPFCGDNVINHFTCE ILAVLKLACANISINIISMVVASMIFLVGPVLFIFVTYVFILSTILRIPSAEGRHKASST CSAHLTVVIIFYRTILFMYAKPKAKDSSGADKEQVTDKIISLFYGVVTPMLNPLIYSLRN KDVKAAVKSILXKCFLEGI Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 9 | 100 | -100 | SNP | T/A | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI) | |
| 9 | 104,656,960 | 104,656,960 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 9 | 104,657,326 | 104,657,326 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 9 | 107,419,043 | 107,419,043 | SNP | C/T | rs62569029 (DbSNP) | |
| 9 | 107,419,241 | 107,419,241 | SNP | C/T | rs7872725 (DbSNP) | |
| 9 | 107,419,607 | 107,419,607 | SNP | A/G | rs1425569 (DbSNP) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.