OR13C2 Olfactory Receptor
| Gene Symbol | OR13C21 (View this gene in GeneCards) |
| Family | 13 |
| Subfamily | C |
| Pseudogene | No |
| CORP pseudogene probability score | 0.1 (functional) |
| Aliases | OR9-12, HsOR9.4.7, ORL3228 |
| External Ids | HGNC: 14701 GeneBank: AB065709, BK004408, NM_001004481 ORDB: ORL3228 |
| Build #39 labels | OR13C2 |
| Chromosomal location | 9:104,604,674-104,605,627 (-) |
| Cluster | 9@107 |
| Synteny | CLIC#19 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR13C5 | 92.77% | 318 |
| OR13C9 | 91.51% | 318 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR13C2B | 91% | 313 |
| Mouse | Or13c7b | 69% | 314 |
| Rat | Or13c9 | 81% | 313 |
| Cow | OR13C2E | 88% | 318 |
| Cow | OR13C2D | 87% | 318 |
| Cow | OR13C2C | 86% | 318 |
| Orang | OR13C2P | 94% | 318 |
| Orang | OR13C9 | 92% | 318 |
| Horse | OR13C2G | 88% | 318 |
| Horse | OR13C2H | 86% | 318 |
| Chimp | OR13C5 | 92% | 318 |
| Chimp | OR13C9P | 91% | 308 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AB529292 |
| GNF Atlas2 | gnf1h02222_s_at |
Sequence information
| Nucleotide sequence |
ATGGAATGGGAAAACCACACCATTCTGGTGGAATTTTTTCTGAAGGGACTTTCTGGTCAC CCAAGACTTGAGTTACTCTTTTTTGTGCTCATCTTCATAATGTATGTGGTCATCCTTCTG GGGAATGGTACTCTCATTTTAATCAGCATCTTGGACCCTCACCTTCACACCCCTATGTAC TTCTTTCTGGGGAACCTCTCCTTCTTGGACATCTGCTACACCACCACCTCTATTCCCTCC ACGCTAGTGAGCTTCCTTTCAGAAAGAAAGACCATTTCCCTTTCTGGCTGTGCAGTGCAG ATGTTCCTCGGCTTGGCCATGGGGACAACAGAGTGTGTGCTTCTGGGCATGATGGCCTTT GACCGCTATGTGGCTATCTGCAACCCTCTGAGATATCCCATCATCATGAGTAAGGATGCC TATGTACCCATGGCAGCTGGGTCCTGGATCATAGGAGCTGTCAATTCTGCAGTACAATCA GTGTTTGTGGTACAATTGCCTTTCTGCAGGAATAACATCATCAATCATTTCACCTGTGAA ATTCTGGCTGTCATGAAACTGGCCTGTGCTGACATCTCAGACAATGAGTTCATCATGCTT GTGGCCACAACATTGTTCATATTGACACCTTTGTTATTAATCATTGTCTCTTACACGTTA ATCATTGTGAGCATCTTCAAAATTAGCTCTTCCGAGGGGAGAAGCAAAGCTTCCTCTACC TGTTCAGCCCATCTGACTGTGGTCATAATATTCTATGGGACCATCCTCTTCATGTACATG AAGCCCAAGTCTAAAGAGACACTTAATTCGGATGACTTGGATGCTACCGACAAAATTATA TCCATGTTCTATGGGGTGATGACTCCCATGATGAATCCTTTAATCTACAGTCTTAGAAAC AAGGATGTGAAAGAGGCAGTAAAACACCTACTGAACAGAAGGTTCTTTAGCAAG |
| Conceptual translation |
MEWENHTILVEFFLKGLSGHPRLELLFFVLIFIMYVVILLGNGTLILISILDPHLHTPMY FFLGNLSFLDICYTTTSIPSTLVSFLSERKTISLSGCAVQMFLGLAMGTTECVLLGMMAF DRYVAICNPLRYPIIMSKDAYVPMAAGSWIIGAVNSAVQSVFVVQLPFCRNNIINHFTCE ILAVMKLACADISDNEFIMLVATTLFILTPLLLIIVSYTLIIVSIFKISSSEGRSKASST CSAHLTVVIIFYGTILFMYMKPKSKETLNSDDLDATDKIISMFYGVMTPMMNPLIYSLRN KDVKEAVKHLLNRRFFSK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 9 | 107,367,393 | 107,367,396 | In-Del(4) | -/TAAC | rs60058604 (DbSNP) | |
| 9 | 107,367,396 | 107,367,399 | In-Del(4) | -/TAAC | rs71991336 (DbSNP) | |
| 9 | 107,367,431 | 107,367,431 | NS | A/T | S/T | rs1851716 (DbSNP) |
| 9 | 107,367,008 | 107,367,008 | NS | C/T | E/K | rs10156474 (DbSNP) |
| 9 | 107,367,318 | 107,367,318 | NS | G/T | F/L | rs72730657 (DbSNP) |
| 9 | 107,367,132 | 107,367,132 | SYN | A/G | Y/Y | rs10820679 (DbSNP) |
| 9 | 107,367,612 | 107,367,612 | SYN | C/T | V/V | rs55706329 (DbSNP) |
| 9 | 104,605,150 | 104,605,150 | NS | A/T | S/T | 1000GP (CEU) |
| 9 | 104,604,851 | 104,604,851 | SYN | G/A | Y/Y | 1000GP (CEU, CHBJPT) |
| 9 | 100 | -100 | SYN | G/A | Y/Y | 1000GP (YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 9 | 107,359,802 | 107,384,394 | CopyNumber | Variation_2829 (DGV) |
| 9 | 107,359,990 | 107,369,323 | CopyNumber | Variation_22820 (DGV) |
| 9 | 107,362,211 | 107,369,310 | CopyNumber | Variation_33147 (DGV) |
| 9 | 107,366,028 | 107,368,359 | CopyNumber | Variation_63139 (DGV) |
| 9 | 107,361,609 | 107,369,324 | CopyNumber | Variation_65480 (DGV) |
| 9 | 107,361,236 | 107,368,044 | CopyNumber | Variation_83131 (DGV), Variation_96222 (DGV) |
| 9 | 107,361,236 | 107,379,709 | CopyNumber | Variation_96223 (DGV) |
| 9 | 107,361,236 | 107,370,284 | CopyNumber | Variation_96224 (DGV) |
| 9 | 107,360,837 | 107,368,182 | CopyNumber | Variation_100735 (DGV) |
| CopyNumber | 5 (Hasin) | |||
| 9 | 107,364,955 | 107,368,008 | Deletion | #303 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| F257V | S229R | I181L | % Freq | CORP | |
|---|---|---|---|---|---|
| 1 | F | S | I | 96.74 | 0.134 |
| 2 | V | S | I | 1.90 | 0.134 |
| 3 | F | S | L | 0.95 | 0.134 |
| 4 | F | R | I | 0.41 | 0.134 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR13C2.aApr07-unspliced | main_exon | 3UTR | chr9 | 104,604,671 | 104,604,674 | - |
| CDS | chr9 | 104,604,674 | 104,605,627 | - | ||