OR13C4 Olfactory Receptor
| Gene Symbol | OR13C41 (View this gene in GeneCards) |
| Family | 13 |
| Subfamily | C |
| Pseudogene | No |
| CORP pseudogene probability score | 0.06 (functional) |
| Aliases | OR9-7, HsOR9.4.2, ORL3223 |
| External Ids | HGNC: 14722 GeneBank: AB065714, AF399602, BK004411, NM_001001919 ORDB: ORL3223 |
| Build #39 labels | OR13C4 |
| Chromosomal location | 9:104,526,256-104,527,209 (-) |
| Cluster | 9@107 |
| Synteny | CLIC#19 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR13C3 | 83.91% | 317 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR13C3 | 85% | 317 |
| Mouse | Or13c3 | 82% | 316 |
| Rat | Or13c3b | 81% | 316 |
| Rat | Or13c3 | 81% | 316 |
| Rat | Or13c3c | 81% | 316 |
| Rat | Or13c3g | 80% | 316 |
| Cow | OR13C3 | 83% | 317 |
| Orang | OR13C3P | 81% | 317 |
| Horse | OR13C3 | 85% | 317 |
| Chimp | OR13C4P | 98% | 318 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AB463956 |
| GNF Atlas2 | gnf1h05171_at |
Sequence information
| Nucleotide sequence |
ATGGACAAGATAAACCAGACATTTGTGAGAGAATTCATTCTTCTGGGACTCTCTGGTTAC CCCAAACTTGAGATCATTTTCTTTGCTCTGATTCTAGTTATGTACGTAGTGATTCTAATT GGCAATGGTGTTCTGATCATAGCAAGCATCTTGGATTCTCGTCTTCACATGCCCATGTAC TTCTTCCTGGGCAACCTCTCTTTCCTGGATATCTGCTATACAACCTCCTCCATTCCCTCA ACACTGGTGAGCTTAATCTCAAAGAAAAGAAACATTTCCTTCTCTGGATGTGCAGTGCAG ATGTTCTTTGGGTTTGCAATGGGGTCAACAGAATGTTTCCTCCTTGGCATGATGGCATTT GATCGTTATGTGGCCATCTGTAACCCTCTGAGATACCCCATCATCATGAACAAGGTGGTG TATGTACTGCTGACTTCTGTATCATGGCTTTCTGGTGGAATCAATTCAACTGTGCAAACA TCACTTGCCATGCGATGGCCTTTCTGTGGGAACAATATTATTAATCATTTCTTATGCGAG ATCTTAGCTGTCCTAAAATTAGCTTGTTCTGATATATCTGTCAATATTGTTACCCTAGCA GTGTCAAATATTGCTTTCCTAGTTCTTCCTCTGCTCGTGATTTTTTTCTCCTATATGTTC ATCCTCTACACCATCTTGCGAACGAACTCGGCCACAGGAAGACACAAGGCATTTTCTACA TGCTCAGCTCACCTGACTGTGGTGATCATATTTTATGGTACCATCTTCTTTATGTATGCA AAACCTAAGTCCCAGGACCTCCTTGGGAAAGACAACTTGCAAGCTACAGAGGGGCTTGTT TCCATGTTTTATGGGGTTGTGACCCCCATGTTAAACCCCATAATCTATAGCTTGAGAAAT AAAGATGTAAAAGCTGCTATAAAATATTTGCTGAGCAGGAAAGCTATTAACCAG |
| Conceptual translation |
MDKINQTFVREFILLGLSGYPKLEIIFFALILVMYVVILIGNGVLIIASILDSRLHMPMY FFLGNLSFLDICYTTSSIPSTLVSLISKKRNISFSGCAVQMFFGFAMGSTECFLLGMMAF DRYVAICNPLRYPIIMNKVVYVLLTSVSWLSGGINSTVQTSLAMRWPFCGNNIINHFLCE ILAVLKLACSDISVNIVTLAVSNIAFLVLPLLVIFFSYMFILYTILRTNSATGRHKAFST CSAHLTVVIIFYGTIFFMYAKPKSQDLLGKDNLQATEGLVSMFYGVVTPMLNPIIYSLRN KDVKAAIKYLLSRKAINQ Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 9 | 107,288,648 | 107,288,647 | Ins(1) | -/G | rs35941351 (DbSNP) | |
| 9 | 107,288,751 | 107,288,751 | NS | A/G | V/A | rs10991292 (DbSNP) |
| 9 | 107,288,995 | 107,288,995 | NS | A/G | W/R | rs41277753 (DbSNP) |
| 9 | 107,289,352 | 107,289,352 | NS | T/C | I/V | rs61738891 (DbSNP) |
| 9 | 104,526,673 | 104,526,673 | SYN | G/A | C/C | 1000GP (CEU) |
| 9 | 104,526,714 | 104,526,714 | NS | A/G | W/R | 1000GP (CEU) |
| 9 | 104,526,259 | 104,526,259 | NS | G/C | N/K | 1000GP (CHBJPT) |
| 9 | 104,526,305 | 104,526,305 | NS | T/C | D/G | 1000GP (CHBJPT) |
| 9 | 104,526,433 | 104,526,433 | nonsense SNP | A/C | Y/* | 1000GP (CHBJPT) |
| 9 | 104,526,451 | 104,526,451 | SYN | A/G | G/G | 1000GP (CHBJPT) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 161 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| N317K | D302G | Y259* | F220S | W166R | G43D | % Freq | CORP | |
|---|---|---|---|---|---|---|---|---|
| 1 | N | D | Y | F | W | G | 97.31 | 0.078 |
| 2 | N | G | Y | F | W | G | 1.00 | 0.078 |
| 3 | K | D | * | F | W | G | 0.69 | 1.200 |
| 4 | N | D | Y | F | R | G | 0.69 | 0.078 |
| 5 | N | D | Y | S | W | G | 0.15 | 0.078 |
| 6 | N | D | Y | F | W | D | 0.15 | 0.078 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR13C4.aApr07-unspliced | main_exon | 3UTR | chr9 | 104,526,253 | 104,526,256 | - |
| CDS | chr9 | 104,526,256 | 104,527,209 | - | ||