OR13C6P Olfactory Receptor
| Gene Symbol | OR13C6P1 (View this gene in GeneCards) |
| Family | 13 |
| Subfamily | C |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR9.1.4P, ORL326 |
| External Ids | HGNC: 15101 GeneBank: AF399465, NG_004378 ORDB: ORL326 |
| Build #39 labels | OR13C6P |
| Chromosomal location | 9:35,991,339-35,992,285 (-) |
| Cluster | 9@36 |
| Synteny | CLIC#17 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR13C7P | 88.36% | 318 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR13C7F | 88% | 315 |
| Dog | OR13C7I | 85% | 314 |
| Mouse | Or13c7d | 86% | 317 |
| Mouse | Or13c7 | 85% | 319 |
| Mouse | Or13c7b | 83% | 319 |
| Mouse | Or13c7e-ps | 85% | 314 |
| Rat | Or13c7e | 87% | 315 |
| Rat | Or13c7 | 86% | 315 |
| Rat | Or13c7d | 85% | 317 |
| Cow | OR13C7 | 88% | 317 |
| Orang | OR13C6 | 95% | 319 |
| Horse | OR13C7 | 83% | 319 |
| Horse | OR13C7M | 82% | 319 |
| Horse | OR13C7O | 81% | 319 |
| Chimp | OR13C7F | 96% | 317 |
Expression evidences
| Source | Accession |
|---|---|
| GNF Atlas2 | gnf1h10592_x_at |
Sequence information
| Nucleotide sequence |
ATGGTCAGTTCCAATCAGACCTCCCCTGTGCTGGGGTTCCTTCTCCTGGGGCTCTCTGCC CATCCAAAGCTGGAGAAGACATTCTTCGTGCTCATCCTGCTGATGTACCTGGTGATCCTA CTGGGCAATGGGGTCCTCATCCTGGTGACCATCCTTGACTCCCGCCTGGACACACCCATG TACTTCTTCCTGGGGAACCTCTCCTTCCTGGACATCTGCTATACAACCTCCTCATCCTTG ACAGCTTCCTGACCCCCAGGAAAACCATCTCCTTCTCAGCCTGTGCAGTACAGATGTTCC TCTCCCTTGCCATGGGAGCCACAGAGTGTGTTCTCCTGAGCATGATGGCGTTTGATCGCT ACGTGGCCATCTGCAACCCCCTTTGGTACCCTGAAGTCATGAACAAAGCTACTTATGTGC CCATGGCTGCTGGCTCCTGGGTAGCTGGAAGCCTCACTGCCATGGTGCAGACACCCCTTG CATTGAGGCTGCCCTTCTGTGGAGACAACATCATCAATCACTTCACCTGTGAGATTCTGG CTGTCCTGAAGTTGGCCTGTGCTGATATCTCTGTCAATGTGATCAGTATGGGAGTGGCCA ATGTGATCTTCCTGGGGGTCCCTGTTCTGTTCATCTCTTTCTCCTATGTCTTCATCATTG CCACCATCCTGAGGATCCCCTCAGCTGAGGGGAGGAAAAAGGCCTTCTCCACCTGCTCTG CCCACCTCACTGTCGTGATCGTCTTCTACGGGACCATCCTCTTCATGTACGGGAAGCCCA AGTCTAAGGACCCACTGGGAGCAGACAAACAGGACCTTGCAGACAAACTCATTTCCCTTT TCTATGGGGTGGTGACCCCCATGCTCAACCCCATCATCTACAGCCTGAGGAACAAGGAAG TGAAGGCTGCTGTGAGGAACCTGGTATTTCAGAAACGCTTCCTGCAG |
| Conceptual translation |
MVSSNQTSPVLGFLLLGLSAHPKLEKTFFVLILLMYLVILLGNGVLILVTILDSRLDTPM YFFLGNLSFLDICYTTSSSL/SFLTPRKTISFSACAVQMFLSLAMGATECVLLSMMAFD RYVAICNPLWYPEVMNKATYVPMAAGSWVAGSLTAMVQTPLALRLPFCGDNIINHFTCEI LAVLKLACADISVNVISMGVANVIFLGVPVLFISFSYVFIIATILRIPSAEGRKKAFSTC SAHLTVVIVFYGTILFMYGKPKSKDPLGADKQDLADKLISLFYGVVTPMLNPIIYSLRNK EVKAAVRNLVFQKRFLQ Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 9 | 35,992,184 | 35,992,192 | Del(9) | -/CAGGATGAG | rs5897624 (DbSNP) | |
| 9 | 35,992,186 | 35,992,194 | Del(9) | -/GGATGAGCA | rs34676096 (DbSNP) | |
| 9 | 35,991,557 | 35,991,557 | SNP | A/G | rs73645906 (DbSNP) | |
| 9 | 35,991,899 | 35,991,899 | SNP | A/T | rs73645908 (DbSNP) | |
| 9 | 35,991,806 | 35,991,806 | SNP | C/G | rs73645907 (DbSNP) | |
| 9 | 35,992,186 | 35,992,186 | SNP | C/G | rs2381481 (DbSNP) | |
| 9 | 35,992,172 | 35,992,172 | SNP | C/T | rs73645974 (DbSNP) | |
| 9 | 35,992,256 | 35,992,256 | SNP | G/A | rs1408467 (DbSNP) | |
| 9 | 35,991,534 | 35,991,534 | SNP | G/A | rs72505714 (DbSNP) | |
| 9 | 35,991,384 | 35,991,384 | SNP | G/T | rs73645905 (DbSNP) | |
| 9 | 35,992,189 | 35,992,189 | mixed | -/A/T/TTCGTGCTC | rs2890717 (DbSNP) | |
| 9 | 35,992,259 | 35,992,259 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 9 | 100 | -100 | SNP | T/G | 1000GP (YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 9 | 35,991,115 | 35,992,302 | CopyNumber | Variation_52809 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.