OR13C7P Olfactory Receptor
| Gene Symbol | OR13C7P1 (View this gene in GeneCards) |
| Family | 13 |
| Subfamily | C |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR9.1.5P |
| External Ids | HGNC: 15102 GeneBank: AF399600, NG_002408 |
| Build #39 labels | OR13C7P |
| Chromosomal location | 9:36,002,912-36,003,867 (-) |
| Cluster | 9@36 |
| Synteny | CLIC#17 |
| Remarks | Segregating Pseudo Gene, a polymorphism of 2 bp insertion (AA) at positions 435-436 |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR13C6P | 88.36% | 318 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR13C7 | 89% | 318 |
| Dog | OR13C7F | 88% | 314 |
| Dog | OR13C7G | 86% | 318 |
| Dog | OR13C7I | 87% | 315 |
| Mouse | Or13c7 | 87% | 316 |
| Mouse | Or13c7d | 86% | 318 |
| Mouse | Or13c7c | 86% | 314 |
| Mouse | Or13c7b | 85% | 317 |
| Rat | Or13c7e | 89% | 316 |
| Rat | Or13c7 | 88% | 312 |
| Rat | Or13c7b | 87% | 314 |
| Cow | OR13C7 | 88% | 318 |
| Cow | OR13C7L | 87% | 318 |
| Orang | OR13C6 | 91% | 318 |
| Horse | OR13C7 | 88% | 318 |
| Horse | OR13C7M | 85% | 316 |
| Chimp | OR13C7 | 98% | 318 |
Expression evidences
| Source | Accession |
|---|---|
| GNF Atlas2 | gnf1h10593_x_at |
| GNF Atlas2 | gnf1h10595_at |
Sequence information
| Nucleotide sequence |
ATGGTAAGTGCCAATCAGACAGCCTCTGTGACCGAGTTTATTCTCCTGGGCCTCTCTGCC CACCCAAAGCTGGAGAAAACGTTCTTTGTGCTCATCCTGCTGATGTACCTGGTGATCCTA CTGGGCAATGGGGTCCTCATCCTGATGACTGTGTCCAACTCCCACCTGCACATGCCCATG TACTTCTTCCTGGGGAACCTCTCCTTCCTGGACATCTGCTATACAACATCCTCAGTCCCC CTCATCCTTGACAGCTTCTTGACCCCCAGGAAAACCATCTCCTTCTCAGCCTGTGCAGTG CAGATGTTCCTCTCCTTTGCCATGGGAGCCACAGAGTGTGTTCTCCTGAGCATGATGGCG TTTGATCGCTACGTGGCCATCTGCAACCCCCTTAGGTACCCTGTGGTCATGAGCAAGGCT GCCTACATGCCCATAAGGCTGCCGGCTCCTGGGTAGCTGGAAGCACTGCTTCCATGGTGC AGACATCCCTTGCAATGAGGCTGCCCTTCTGTGGAGACAACATCATCAACCACTTCACCT GTGAGATTCTGGCTGTCCTGAAGTTGGCCTGTGCTGATATCTCTGTCAATGTGATCAGTA TGGGAGTGACCAATGTGATCTTCCTGGGGGTCCCGGTTCTGTTCATCTCTTTCTCCTATG TCTTCATCATTGCCACCATCCTGAGGATCCCCTCAGCTGAGGGGAGGAAAAAGGCCTTCT CCACCTGCTCTGCCCACCTCACAGTCGTGGTCATCTTCTATGGGACCATCCTCTTCATGT ATGGGAAGCCCAAGTCTAAGGACCCGCTGGGGGCAGACAAGCAAGACCTTGCAGACAAAC TCATTTCCCTTTTCTATGGGGTGGTGACCCCCATGCTCAACCCCATCATCTACAGCCTGA GGAACAAGGATGTAAAGGCTGCTGTGAGGGACTTGATATTTCAGAAATGCTTTGCC |
| Conceptual translation |
MVSANQTASVTEFILLGLSAHPKLEKTFFVLILLMYLVILLGNGVLILMTVSNSHLHMPM YFFLGNLSFLDICYTTSSVPLILDSFLTPRKTISFSACAVQMFLSFAMGATECVLLSMMA FDRYVAICNPLRYPVVMSKAAYMP/KAAGSWVAGSTASMVQTSLAMRLPFCGDNIINHF TCEILAVLKLACADISVNVISMGVTNVIFLGVPVLFISFSYVFIIATILRIPSAEGRKKA FSTCSAHLTVVVIFYGTILFMYGKPKSKDPLGADKQDLADKLISLFYGVVTPMLNPIIYS LRNKDVKAAVRDLIFQKCFA Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 9 | 36,003,037 | 36,003,037 | SNP | A/G | rs10972683 (DbSNP) | |
| 9 | 36,003,423 | 36,003,423 | SNP | A/G | rs12336471 (DbSNP) | |
| 9 | 36,003,335 | 36,003,335 | SNP | A/G | rs10814312 (DbSNP) | |
| 9 | 36,002,928 | 36,002,928 | SNP | A/G | rs10972681 (DbSNP) | |
| 9 | 36,003,306 | 36,003,306 | SNP | A/T | rs10814311 (DbSNP) | |
| 9 | 36,002,936 | 36,002,936 | SNP | C/G | rs72729461 (DbSNP) | |
| 9 | 36,002,929 | 36,002,929 | SNP | C/T | rs10972682 (DbSNP) | |
| 9 | 36,003,720 | 36,003,720 | SNP | C/T | rs10972685 (DbSNP) | |
| 9 | 36,003,635 | 36,003,635 | SNP | G/T | rs10972684 (DbSNP) | |
| 9 | 36,002,931 | 36,002,931 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 9 | 36,002,932 | 36,002,932 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 9 | 36,003,040 | 36,003,040 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 9 | 36,003,338 | 36,003,338 | SNP | G/A | 1000GP (CEU) | |
| 9 | 36,003,426 | 36,003,426 | SNP | G/A | 1000GP (CEU) | |
| 9 | 36,003,638 | 36,003,638 | SNP | G/T | 1000GP (CEU, CHBJPT) | |
| 9 | 36,003,723 | 36,003,723 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 9 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 9 | 36,000,909 | 36,003,964 | CopyNumber | #45 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.