OR13C8 Olfactory Receptor
| Gene Symbol | OR13C81 (View this gene in GeneCards) |
| Family | 13 |
| Subfamily | C |
| Pseudogene | No |
| CORP pseudogene probability score | 0.06 (functional) |
| Aliases | OR9-10, HsOR9.4.4, ORL3225 |
| External Ids | HGNC: 15103 GeneBank: AB065711, AF399599, BK004607, NM_001004483 ORDB: ORL3225 |
| Build #39 labels | OR13C8 |
| Chromosomal location | 9:104,569,168-104,570,127 (+) |
| Cluster | 9@107 |
| Synteny | CLIC#19 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR13C1P | 67.08% | 319 |
| OR13C7P | 68.65% | 319 |
| OR2S2 | 66.67% | 318 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR13C7G | 71% | 318 |
| Mouse | Or13c25 | 79% | 318 |
| Rat | Or13c25 | 77% | 317 |
| Cow | OR13C1 | 71% | 320 |
| Orang | OR13C8P | 93% | 320 |
| Horse | OR13C8B | 84% | 319 |
| Chimp | OR13C7 | 70% | 318 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AB463957 |
| GNF Atlas2 | gnf1h05172_at |
Sequence information
| Nucleotide sequence |
ATGGAAAGGACCAACGATTCCACGTCGACAGAATTTTTCCTGGTAGGGCTTTCTGCCCAC CCAAAGCTCCAGACAGTTTTCTTCGTTCTAATTTTGTGGATGTACCTGATGATCCTGCTT GGAAATGGAGTCCTTATCTCAGTTATCATCTTTGATTCTCACCTGCACACCCCCATGTAT TTCTTCCTCTGTAATCTTTCCTTCCTCGACGTTTGCTACACAAGTTCCTCTGTCCCACTA ATTCTTGCCAGCTTTCTGGCAGTAAAGAAAAAGGTTTCCTTCTCTGGGTGTATGGTGCAA ATGTTTATTTCTTTTGCCATGGGGGCCACGGAGTGCATGATCTTAGGCACGATGGCACTG GACCGCTATGTGGCCATCTGCTACCCACTGAGATACCCTGTCATCATGAGCAAGGGTGCC TATGTGGCCATGGCAGCTGGGTCCTGGGTCACTGGGCTTGTGGACTCAGTAGTGCAGACA GCTTTTGCAATGCAGTTACCATTCTGTGCTAATAATGTCATTAAACATTTTGTCTGTGAA ATTCTGGCTATCTTGAAACTGGCCTGTGCTGATATTTCAATCAATGTGATTAGTATGACA GGGTCGAATCTGATTGTTCTGGTTATTCCATTGTTAGTAATTTCCATCTCTTACATATTT ATTGTTGCCACTATTCTGAGGATTCCTTCCACTGAAGGAAAACATAAGGCCTTCTCCACC TGCTCAGCCCACCTGACAGTGGTGATTATATTCTATGGAACCATCTTCTTCATGTACGCA AAGCCTGAGTCTAAAGCCTCTGTTGATTCAGGTAATGAAGACATCATTGAGGCCCTCATC TCCCTTTTCTATGGAGTGATGACTCCCATGCTTAATCCTCTCATCTATAGTCTGCGAAAC AAGGATGTAAAGGCTGCTGTCAAAAACATACTGTGTAGGAAAAACTTTTCTGATGGAAAA |
| Conceptual translation |
MERTNDSTSTEFFLVGLSAHPKLQTVFFVLILWMYLMILLGNGVLISVIIFDSHLHTPMY FFLCNLSFLDVCYTSSSVPLILASFLAVKKKVSFSGCMVQMFISFAMGATECMILGTMAL DRYVAICYPLRYPVIMSKGAYVAMAAGSWVTGLVDSVVQTAFAMQLPFCANNVIKHFVCE ILAILKLACADISINVISMTGSNLIVLVIPLLVISISYIFIVATILRIPSTEGKHKAFST CSAHLTVVIIFYGTIFFMYAKPESKASVDSGNEDIIEALISLFYGVMTPMLNPLIYSLRN KDVKAAVKNILCRKNFSDGK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 9 | 107,331,504 | 107,331,504 | NS | A/C | D/A | rs7026705 (DbSNP) |
| 9 | 107,332,041 | 107,332,041 | NS | C/G | T/S | rs10991304 (DbSNP) |
| 9 | 104,569,223 | 104,569,223 | NS | C/A | A/D | 1000GP (CEU, CHBJPT) |
| 9 | 104,569,857 | 104,569,857 | SYN | C/T | S/S | 1000GP (CEU) |
| 9 | 100 | -100 | NS | C/A | A/D | 1000GP (YRI, YRI) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| D6N | S9* | A19D | H20Y | V92L | G96R | K175N | F238V | I310K | % Freq | CORP | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | D | S | D | H | V | G | K | F | I | 59.98 | 0.124 |
| 2 | D | S | A | H | V | G | K | F | I | 35.10 | 0.124 |
| 3 | D | S | D | H | V | G | N | F | I | 1.08 | 0.124 |
| 4 | D | S | A | H | V | G | K | F | K | 1.00 | 0.124 |
| 5 | D | S | D | Y | V | G | K | F | I | 0.84 | 0.124 |
| 6 | N | S | D | H | V | G | K | F | I | 0.69 | 0.124 |
| 7 | D | * | D | H | V | G | K | F | I | 0.61 | 1.200 |
| 8 | D | S | D | H | L | G | K | F | I | 0.31 | 0.124 |
| 9 | D | S | D | H | V | R | K | F | I | 0.23 | 0.124 |
| 10 | D | S | A | H | V | R | K | F | I | 0.08 | 0.124 |
| 11 | D | S | D | H | V | G | K | V | I | 0.08 | 0.205 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR13C8.aApr07-unspliced | main_exon | CDS | chr9 | 104,569,168 | 104,570,127 | + |
| 3UTR | chr9 | 104,570,127 | 104,570,130 | + | ||