OR13C9 Olfactory Receptor
| Gene Symbol | OR13C91 (View this gene in GeneCards) |
| Family | 13 |
| Subfamily | C |
| Pseudogene | No |
| CORP pseudogene probability score | 0.06 (functional) |
| Aliases | OR9-13, HsOR9.4.8, ORL3226 |
| External Ids | HGNC: 15104 GeneBank: AB065672, AB065708, BK004250, NM_001001956 ORDB: ORL3226 |
| Build #39 labels | OR13C9 |
| Chromosomal location | 9:104,617,251-104,618,204 (-) |
| Cluster | 9@107 |
| Synteny | CLIC#19 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR13C2 | 91.51% | 318 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR13C2 | 93% | 318 |
| Dog | OR13C2B | 91% | 313 |
| Mouse | Or13c9 | 84% | 281 |
| Rat | Or13c9 | 84% | 313 |
| Cow | OR13C2D | 86% | 318 |
| Cow | OR13C2 | 86% | 318 |
| Cow | OR13C2E | 86% | 318 |
| Cow | OR13C2C | 85% | 318 |
| Orang | OR13C2P | 87% | 318 |
| Horse | OR13C2H | 90% | 318 |
| Horse | OR13C2 | 87% | 318 |
| Chimp | OR13C9P | 95% | 308 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AB463958 |
| GNF Atlas2 | gnf1h02214_at |
| GNF Atlas2 | gnf1h02215_s_at |
Sequence information
| Nucleotide sequence |
ATGGAATGGGAAAACCAAACCATTCTGGTGGAATTTTTTCTGAAGGGACATTCTGTTCAC CCAAGGCTTGAGTTACTCTTTTTTGTGCTAATCTTCATAATGTATGTGGTCATCCTTCTG GGGAATGGTACTCTCATTTTAATCAGCATCTTGGACCCTCACCTTCACACCCCTATGTAC TTCTTTCTGGGGAACCTCTCCTTCTTGGACATCTGCTACACCACCACCTCTATTCCCTCC ACACTAGTGAGCTTCCTTTCAGAAAGAAAGACCATTTCCTTTTCTGGCTGTGCAGTGCAG ATGTTCCTTGGCTTGGCCATGGGGACAACAGAGTGTGTGCTTCTGGGCATGATGGCCTTT GACCGCTATGTGGCTATCTGCAACCCTCTGAGATATCCCATCATCATGAGCAAGAATGCC TATGTACCCATGGCTGTTGGGTCCTGGTTTGCAGGGATTGTCAACTCTGCAGTACAAACT ACATTTGTAGTACAATTGCCTTTCTGCAGGAAGAATGTCATCAATCATTTCTCATGTGAA ATTCTAGCTGTCATGAAGTTGGCCTGTGCTGACATCTCAGGCAATGAGTTCCTCATGCTT GTGGCCACAATATTGTTCACATTGATGCCACTGCTCTTGATAGTTATCTCTTACTCATTA ATCATTTCCAGCATCCTCAAGATTCACTCCTCTGAGGGGAGAAGCAAAGCTTTCTCTACC TGCTCAGCCCATCTGACTGTGGTCATAATATTCTATGGGACCATCCTCTTCATGTATATG AAGCCCAAGTCTAAAGAGACACTTAATTCAGATGACTTGGATGCTACCGACAAAATTATA TCCATGTTCTATGGGGTGATGACTCCCATGATGAATCCTTTAATCTACAGTCTTAGAAAC AAGGATGTGAAAGAGGCAGTAAAACACCTACCGAACAGAAGGTTCTTTAGCAAG |
| Conceptual translation |
MEWENQTILVEFFLKGHSVHPRLELLFFVLIFIMYVVILLGNGTLILISILDPHLHTPMY FFLGNLSFLDICYTTTSIPSTLVSFLSERKTISFSGCAVQMFLGLAMGTTECVLLGMMAF DRYVAICNPLRYPIIMSKNAYVPMAVGSWFAGIVNSAVQTTFVVQLPFCRKNVINHFSCE ILAVMKLACADISGNEFLMLVATILFTLMPLLLIVISYSLIISSILKIHSSEGRSKAFST CSAHLTVVIIFYGTILFMYMKPKSKETLNSDDLDATDKIISMFYGVMTPMMNPLIYSLRN KDVKEAVKHLPNRRFFSK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 9 | 107,380,414 | 107,380,414 | NS | A/C | D/E | rs2900373 (DbSNP) |
| 9 | 107,380,379 | 107,380,379 | NS | A/G | V/A | rs61322228 (DbSNP) |
| 9 | 107,380,215 | 107,380,215 | NS | A/T | S/T | rs993658 (DbSNP) |
| 9 | 107,379,895 | 107,379,895 | NS | G/T | F/L | rs10761054 (DbSNP) |
| 9 | 107,380,177 | 107,380,177 | SYN | A/G | L/L | rs1813819 (DbSNP) |
| 9 | 107,380,396 | 107,380,396 | SYN | G/T | L/L | rs36091517 (DbSNP) |
| 9 | 104,618,133 | 104,618,133 | NS | C/A | E/D | 1000GP (CEU, CHBJPT) |
| 9 | 104,617,614 | 104,617,614 | NS | G/T | F/L | 1000GP (CEU, CHBJPT) |
| 9 | 104,617,896 | 104,617,896 | SYN | A/G | L/L | 1000GP (CEU, CHBJPT) |
| 9 | 104,618,115 | 104,618,115 | SYN | T/G | L/L | 1000GP (CEU, CHBJPT) |
| 9 | 104,617,934 | 104,617,934 | NS | T/A | T/S | 1000GP (CEU, CHBJPT) |
| 9 | 104,617,263 | 104,617,263 | NS | C/A | R/S | 1000GP (CHBJPT) |
| 9 | 100 | -100 | NS | G/T | F/L | 1000GP (YRI, YRI, YRI, YRI, YRI) |
| 9 | 100 | -100 | SYN | A/G | L/L | 1000GP (YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 9 | 107,359,802 | 107,384,394 | CopyNumber | Variation_2829 (DGV) |
| 9 | 107,361,236 | 107,379,709 | CopyNumber | Variation_96223 (DGV) |
| CopyNumber | 76 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| R314S | A306G | S230P | F197L | V146I | R122C | A98S | T91S | V36A | E24D | % Freq | CORP | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | R | A | S | F | V | R | A | T | V | E | 33.49 | 0.078 |
| 2 | R | A | S | F | V | R | A | S | V | D | 30.34 | 0.078 |
| 3 | R | A | S | L | V | R | A | T | V | E | 23.04 | 0.078 |
| 4 | R | A | S | F | V | R | A | T | V | D | 5.53 | 0.078 |
| 5 | R | A | S | F | V | R | A | T | A | D | 2.69 | 0.078 |
| 6 | R | G | S | F | V | C | A | T | V | E | 1.38 | 0.602 |
| 7 | R | A | S | F | I | R | A | T | V | D | 1.23 | 0.078 |
| 8 | R | A | S | F | V | C | A | T | V | E | 0.84 | 0.602 |
| 9 | S | A | S | L | V | R | A | T | V | E | 0.69 | 0.078 |
| 10 | R | A | S | F | V | R | A | S | V | E | 0.38 | 0.078 |
| 11 | R | A | S | L | V | R | A | S | V | D | 0.15 | 0.078 |
| 12 | R | A | P | L | V | R | A | T | V | E | 0.08 | 0.078 |
| 13 | R | A | S | F | V | R | S | T | V | E | 0.08 | 0.078 |
| 14 | R | A | S | F | V | R | S | S | V | D | 0.08 | 0.078 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR13C9.aApr07-unspliced | main_exon | 3UTR | chr9 | 104,617,248 | 104,617,251 | - |
| CDS | chr9 | 104,617,251 | 104,618,204 | - | ||