OR13D3P Olfactory Receptor
| Gene Symbol | OR13D3P1 (View this gene in GeneCards) |
| Family | 13 |
| Subfamily | D |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR9-16, HsOR9.4.12P, ORL3264 |
| External Ids | HGNC: 15106 GeneBank: AB065463, AB065712, AF399468, BK004730, NG_004400 ORDB: ORL3264 |
| Build #39 labels | OR13D3P |
| Chromosomal location | 9:104,722,335-104,723,268 (+) |
| Cluster | 9@107 |
| Synteny | CLIC#19 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR13D1 | 86.31% | 314 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR13D3 | 86% | 314 |
| Mouse | Or13d1 | 83% | 314 |
| Rat | Or13d1 | 83% | 310 |
| Cow | OR13D1P | 80% | 311 |
| Orang | OR13D1P | 84% | 316 |
| Horse | OR13D1 | 82% | 307 |
| Chimp | OR13D1 | 84% | 314 |
Expression evidences
| Source | Accession |
|---|---|
| GNF Atlas2 | gnf1h10937_at |
Sequence information
| Nucleotide sequence |
ATGGAGACAACAAATCACTCTGCCGTGACTGAATTCTTTCTGGTGGGGCTTTCCCAATAT CCAGAGCTCCAGCTTTTTCTGTTCCTGCTCTGCCTCATCATGTACATGATAATCCTCCTG GGAAATAGCTTCCTCATTATCATCACCATCTTGGATTCTCGCCTCCATACCCCCATGTAT TTCTTTCTTGGAAACCTCTCATTCTTGGGCATCTGTTACACATCATCATCCATTCCTCCA ATGCTTATTATATTTGTATCTGAGAGAAAATCCATCTCCTTCATTGGCTGTGCTCTGCAG ATGGTTGTGTCCCTTGGCTTGGGCTCCATTGAGTGTATCCTCCTGGCTGTGATGGCCTAT GACCGCTATGTGGCCATCTGCAACCCACTGAGGTACTCCATCATCATGAACAGAGTGCTG TATGTGCAAATGGCTGCATGGTCCTGGATCATAGGCTGTCTGACCTCCCTATTGCGAACA GTTCTGACAATGATGTTGCCTTTCTGTGGGAATAATATCATTGATCATCTTACCTGTGAG ATCCTGGCTCTTCTTAAAGTCATATGCTCAGATATCTCCATAAATGTGTTTATAATGACA GTGTCAAGTATTGTTTTATTGGTGATTCCTCTTAATTTTTATCTCCTATGTGTTTATTCT CTCTTCCATCTTGAGAATTAATTCTGCTGAGGGAAGAAAGAAAGCCTTTTTTACCTGTTC AGCGCACTTGACTGTGGTCATCTTATTCTATGGTTCAGTTCTTTTCATGCACATGAAGCC CAAATCAAAGTTCACAACAGCATCTGATGAAATCATTGGATTGTCTTATGAAGTGATCAC CCCAATGAACCCCATCATCTACAGCCTGAGGAATAAGGAGATAAAAGAAGCTGTGAAGAA AATCCTCAGCAGACACGTGCATCTATGGAAAATA |
| Conceptual translation |
METTNHSAVTEFFLVGLSQYPELQLFLFLLCLIMYMIILLGNSFLIIITILDSRLHTPMY FFLGNLSFLGICYTSSSIPPMLIIFVSERKSISFIGCALQMVVSLGLGSIECILLAVMAY DRYVAICNPLRYSIIMNRVLYVQMAAWSWIIGCLTSLLRTVLTMMLPFCGNNIIDHLTCE ILALLKVICSDISINVFIMTVSSIVLLVIPLNF\SYVFILSSILRINSAEGRKKAFFTC SAHLTVVILFYGSVLFMHMKPKSKFTTASDEIIGLSYEVITPMNPIIYSLRNKEIKEAVK KILSRHVHLWKI Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 9 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI, YRI) | |
| 9 | 104,722,575 | 104,722,575 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 9 | 104,722,839 | 104,722,839 | SNP | T/C | 1000GP (CEU) | |
| 9 | 104,722,938 | 104,722,938 | SNP | T/C | 1000GP (CHBJPT) | |
| 9 | 104,723,045 | 104,723,045 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 9 | 104,723,266 | 104,723,266 | SNP | A/G | 1000GP (CEU) | |
| 9 | 107,484,679 | 107,484,679 | SNP | C/G | rs71511781 (DbSNP) | |
| 9 | 107,484,856 | 107,484,856 | SNP | A/G | rs10820717 (DbSNP) | |
| 9 | 107,485,062 | 107,485,062 | SNP | A/G | rs62565983 (DbSNP) | |
| 9 | 107,485,120 | 107,485,120 | SNP | C/T | rs59134781 (DbSNP) | |
| 9 | 107,485,326 | 107,485,326 | SNP | C/T | rs1891189 (DbSNP) | |
| 9 | 107,485,547 | 107,485,547 | SNP | A/G | rs7024118 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 9 | 107,483,413 | 107,485,326 | CopyNumber | Variation_10306 (DGV), Variation_52661 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.