Search Olfactory receptors

(e.g. OR1G1, AF087928, Segregating Pseudo)

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OR13D3P Olfactory Receptor

Gene Symbol OR13D3P1 (View this gene in GeneCards)
Family 13
Subfamily D
Pseudogene Yes
CORP pseudogene probability score
Aliases OR9-16, HsOR9.4.12P, ORL3264
External Ids HGNC: 15106   GeneBank: AB065463, AB065712, AF399468, BK004730, NG_004400   ORDB: ORL3264   
Build #39 labels OR13D3P
Chromosomal location 9:104,722,335-104,723,268 (+)
Cluster 9@107
Synteny CLIC#19
Remarks

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR13D1 86.31% 314

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR13D3 86% 314
Mouse Or13d1 83% 314
Rat Or13d1 83% 310
Cow OR13D1P 80% 311
Orang OR13D1P 84% 316
Horse OR13D1 82% 307
Chimp OR13D1 84% 314

Expression evidences

Source Accession
GNF Atlas2 gnf1h10937_at

Sequence information

Nucleotide sequence ATGGAGACAACAAATCACTCTGCCGTGACTGAATTCTTTCTGGTGGGGCTTTCCCAATAT
CCAGAGCTCCAGCTTTTTCTGTTCCTGCTCTGCCTCATCATGTACATGATAATCCTCCTG
GGAAATAGCTTCCTCATTATCATCACCATCTTGGATTCTCGCCTCCATACCCCCATGTAT
TTCTTTCTTGGAAACCTCTCATTCTTGGGCATCTGTTACACATCATCATCCATTCCTCCA
ATGCTTATTATATTTGTATCTGAGAGAAAATCCATCTCCTTCATTGGCTGTGCTCTGCAG
ATGGTTGTGTCCCTTGGCTTGGGCTCCATTGAGTGTATCCTCCTGGCTGTGATGGCCTAT
GACCGCTATGTGGCCATCTGCAACCCACTGAGGTACTCCATCATCATGAACAGAGTGCTG
TATGTGCAAATGGCTGCATGGTCCTGGATCATAGGCTGTCTGACCTCCCTATTGCGAACA
GTTCTGACAATGATGTTGCCTTTCTGTGGGAATAATATCATTGATCATCTTACCTGTGAG
ATCCTGGCTCTTCTTAAAGTCATATGCTCAGATATCTCCATAAATGTGTTTATAATGACA
GTGTCAAGTATTGTTTTATTGGTGATTCCTCTTAATTTTTATCTCCTATGTGTTTATTCT
CTCTTCCATCTTGAGAATTAATTCTGCTGAGGGAAGAAAGAAAGCCTTTTTTACCTGTTC
AGCGCACTTGACTGTGGTCATCTTATTCTATGGTTCAGTTCTTTTCATGCACATGAAGCC
CAAATCAAAGTTCACAACAGCATCTGATGAAATCATTGGATTGTCTTATGAAGTGATCAC
CCCAATGAACCCCATCATCTACAGCCTGAGGAATAAGGAGATAAAAGAAGCTGTGAAGAA
AATCCTCAGCAGACACGTGCATCTATGGAAAATA
Conceptual translation METTNHSAVTEFFLVGLSQYPELQLFLFLLCLIMYMIILLGNSFLIIITILDSRLHTPMY
FFLGNLSFLGICYTSSSIPPMLIIFVSERKSISFIGCALQMVVSLGLGSIECILLAVMAY
DRYVAICNPLRYSIIMNRVLYVQMAAWSWIIGCLTSLLRTVLTMMLPFCGNNIIDHLTCE
ILALLKVICSDISINVFIMTVSSIVLLVIPLNF\SYVFILSSILRINSAEGRKKAFFTC
SAHLTVVILFYGSVLFMHMKPKSKFTTASDEIIGLSYEVITPMNPIIYSLRNKEIKEAVK
KILSRHVHLWKI

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
9 100 -100 SNP G/A 1000GP (YRI, YRI, YRI, YRI)
9 104,722,575 104,722,575 SNP A/G 1000GP (CEU, CHBJPT)
9 104,722,839 104,722,839 SNP T/C 1000GP (CEU)
9 104,722,938 104,722,938 SNP T/C 1000GP (CHBJPT)
9 104,723,045 104,723,045 SNP T/C 1000GP (CEU, CHBJPT)
9 104,723,266 104,723,266 SNP A/G 1000GP (CEU)
9 107,484,679 107,484,679 SNP C/G rs71511781 (DbSNP)
9 107,484,856 107,484,856 SNP A/G rs10820717 (DbSNP)
9 107,485,062 107,485,062 SNP A/G rs62565983 (DbSNP)
9 107,485,120 107,485,120 SNP C/T rs59134781 (DbSNP)
9 107,485,326 107,485,326 SNP C/T rs1891189 (DbSNP)
9 107,485,547 107,485,547 SNP A/G rs7024118 (DbSNP)

Variations - CNVs

Chr Start End Type Sources
9 107,483,413 107,485,326 CopyNumber Variation_10306 (DGV), Variation_52661 (DGV)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.