OR13I1P Olfactory Receptor
| Gene Symbol | OR13I1P1 (View this gene in GeneCards) |
| Family | 13 |
| Subfamily | I |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR9.4.9P, ORL3249 |
| External Ids | HGNC: 14732 GeneBank: NG_004626 ORDB: ORL3249 |
| Build #39 labels | OR13I1P, OR13I2P |
| Chromosomal location | 9:104,629,754-104,631,018 (+) |
| Cluster | 9@107 |
| Synteny | CLIC#19 |
| Remarks | Disrupted by Alu repeat |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR13D2P | 55.97% | 318 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR13D2 | 53% | 315 |
| Mouse | Or13d1 | 45% | 311 |
| Rat | Or13c7e | 45% | 317 |
| Cow | OR13D2 | 55% | 312 |
| Orang | OR13D2 | 56% | 319 |
| Horse | OR13D2 | 54% | 320 |
| Chimp | OR13D2 | 56% | 319 |
Sequence information
| Nucleotide sequence |
ATGGAAAGGACTAATTGAACAACTGAGTTTGAGTTGATTCTCATAAGTCTATGAGTACTC ATAAGTTGACAAAAACTCCTTTTTGTCACATGCTTAGTGGTGTATCTAGTGACCCTCTTG GGGAACAGAATACAGATCATCCCAACACTCCTTGTTTCCCACCTATATTTATGCCATGGC AATCCCTCCTTCCTGGATATCGGGCTTACGTCCTTTTTACTCCCTCTATCCTAATAAACT TCCTATCAGAGGGAAAAAAACTCTCTTTCACAGATTGTATTATACAAATGTCTATCTTCT ATTCCATGGGGTCCACGGAGTGTGTGCTCCTAGCAGTGATGGCATATGATAACTGTGTGG TCATCAGCAAATTCCTGAGATACCCTCTCATCATAAATAAAAGGTGCTTTGTGTTTTCAT GGCTACTGTCTCTTATGAATTAGGATTTCTCAACAGACAAAATGTATTAATAGTTACATA TGAATGCACTTTTGTGGAAAACACATCATTAATCATTTTTATAAAATATTACAGTTAATG CCTCTGGCTTGCATAGATATTTCCTTGAATGAGAATATAATAATATTGGGCAAAGTAAAC TTTTCATTTACTTTATTACTACCATTTCAGTTCTTTATATTCAGTTTTTTATATTTTCAC CATCTATGCTGTATTGAAATCAATTCAGCTGAAGGAAGGAAAAAGGTCTCTTCCACCTGT TCAGCCCACATAACAGTGGTGATTGTGTTTCACCGGACAATCCTCTTCATGTACATAAAG TCAACATCTAATGGCACTACTTCAGAGAAACTGGTTGACCTGTTCTGCGGGGTAGTAATG CTCATGCTCAATCTTATCATCTATAGCCTGGGGAATATGGAGGTGCTTGGGGTTATGAAG AAATTGATCAGTATGAGTAGACCCTGGTGCTGGAAAAATGATG |
| Conceptual translation |
MERTNXTEFELILISLXLISXKLLFVTCLVVYLVTLLGNRIQIIPTLLVSHLYLCHG NPSFLDIGLTS/FTPSILINFLSEGKKLSFTDCIIQMSIFYSMGSTECVLLAVMAYDNC VVISKFLRYPLIINKKVLCVFMATVSYELGFLN/TKCINSYIXHFCGKHIINHFYKIL QLMPLACIDISLNENIIILGKVNFSFTLLLPFQFFIFSFLYFHHLCCIEINSAEGRKKVS STCSAHITVVIVFHRTILFMYIKSTSNGTTSEKLVDLFCGVVMLMLNLIIYSLGNMEVLG VMKKLISMSRPWCWKND Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 9 | 107,392,944 | 107,392,943 | Ins(1) | -/G | rs35635415 (DbSNP) | |
| 9 | 107,393,278 | 107,393,278 | SNP | A/C | rs10820694 (DbSNP) | |
| 9 | 107,392,561 | 107,392,561 | SNP | A/C | rs11793114 (DbSNP) | |
| 9 | 107,392,602 | 107,392,602 | SNP | A/G | rs10820692 (DbSNP) | |
| 9 | 107,392,491 | 107,392,491 | SNP | A/G | rs6479267 (DbSNP) | |
| 9 | 107,392,508 | 107,392,508 | SNP | A/G | rs11789025 (DbSNP) | |
| 9 | 107,392,655 | 107,392,655 | SNP | A/G | rs13298421 (DbSNP) | |
| 9 | 107,392,841 | 107,392,841 | SNP | A/T | rs57890634 (DbSNP) | |
| 9 | 107,392,735 | 107,392,735 | SNP | A/T | rs62569018 (DbSNP) | |
| 9 | 107,392,642 | 107,392,642 | SNP | C/G | rs6479268 (DbSNP) | |
| 9 | 107,392,167 | 107,392,167 | SNP | C/T | rs7039604 (DbSNP) | |
| 9 | 107,392,845 | 107,392,845 | SNP | C/T | rs10820693 (DbSNP) | |
| 9 | 107,393,197 | 107,393,197 | SNP | C/T | rs10991335 (DbSNP) | |
| 9 | 107,392,594 | 107,392,594 | SNP | C/T | rs11787680 (DbSNP) | |
| 9 | 107,392,057 | 107,392,057 | SNP | C/T | rs10820691 (DbSNP) | |
| 9 | 107,392,312 | 107,392,312 | SNP | G/T | rs13300001 (DbSNP) | |
| 9 | 107,393,137 | 107,393,137 | SNP | G/T | rs6479269 (DbSNP) | |
| 9 | 104,629,776 | 104,629,776 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 9 | 104,629,886 | 104,629,886 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 9 | 104,630,227 | 104,630,227 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 9 | 104,630,313 | 104,630,313 | SNP | T/C | 1000GP (CEU) | |
| 9 | 104,630,564 | 104,630,564 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 9 | 104,630,856 | 104,630,856 | SNP | T/G | 1000GP (CEU) | |
| 9 | 104,630,916 | 104,630,916 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 9 | 104,630,997 | 104,630,997 | SNP | C/A | 1000GP (CEU, CHBJPT) | |
| 9 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 77 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.