OR14J1 Olfactory Receptor
| Gene Symbol | OR14J11 (View this gene in GeneCards) |
| Family | 14 |
| Subfamily | J |
| Pseudogene | No |
| CORP pseudogene probability score | 0.09 (functional) |
| Aliases | hs6M1-28, bA150A6.4, HsOR6.3.16 |
| External Ids | HGNC: 13971 |
| Build #39 labels | OR5U1 |
| Chromosomal location | 6:29,306,690-29,307,652 (+) |
| Cluster | 6@29 |
| Synteny | CLIC#0 |
| Remarks | Belongs to OR14- a new family which is expanded in opossum and platypus. Was previously classified into family 5 with the symbol OR5U1. |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR14A16 | 51.77% | 311 |
| OR14L1P | 51.9% | 289 |
| OR14A2 | 49.84% | 305 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR14J1B | 83% | 320 |
| Mouse | Or14j1 | 80% | 320 |
| Rat | Or14j1 | 80% | 320 |
| Cow | OR14J12 | 68% | 312 |
| Orang | OR14A263 | 56% | 295 |
| Horse | OR14J13 | 60% | 307 |
| Chimp | OR14A262 | 56% | 309 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | BC136905 |
| GNF Atlas2 | gnf1h10950_at |
Sequence information
| Nucleotide sequence |
ATGGTCAATTTGACTTCAATGAGTGGATTCCTTCTTATGGGGTTTTCTGATGAGCGTAAG CTTCAGATTTTACATGCATTGGTATTTCTGGTGACATACCTGCTGGCCTTGACAGGCAAC CTCCTCATTATCACCATCATTACCGTGGACCGTCGTCTCCATTCCCCCATGTATTACTTT TTAAAGCACCTCTCTCTTCTGGACCTCTGCTTCATCTCTGTCACAGTCCCCCAGTCCATT GCAAATTCACTTATGGGCAACGGTTACATTTCTCTTGTTCAGTGCATTCTTCAGGTTTTC TTCTTCATAGCTCTGGCCTCATCAGAAGTGGCCATTCTCACAGTGATGTCTTATGACAGG TACGCAGCAATCTGTCAACCACTTCATTATGAGACTATTATGGATCCCCGTGCCTGTAGG CATGCAGTGATAGCTGTGTGGATTGCTGGGGGCCTCTCTGGGCTCATGCATGCTGCCATT AACTTCTCCATACCTCTCTGTGGGAAGAGAGTCATTCACCAATTCTTCTGTGATGTTCCT CAGATGCTGAAACTAGCCTGTTCTTATGAATTCATTAATGAGATTGCACTGGCTGCATTC ACAACGTCTGCAGCATTTATCTGTTTGATCTCCATTGTGCTCTCCTACATTCGCATCTTC TCTACAGTGCTGAGAATCCCATCAGCTGAGGGCCGGACCAAGGTCTTCTCCACCTGCCTA CCACACCTATTTGTAGCCACCTTCTTTCTTTCAGCTGCAGGCTTTGAGTTTCTCAGACTG CCTTCTGATTCCTCATCGACTGTGGACCTTGTATTCTCCGTATTCTATACTGTGATACCT CCAACACTCAATCCAGTCATTTATAGCTTACGGAATGATTCCATGAAGGCAGCACTGAGG AAGATGCTGTCAAAGGAAGAGCTTCCTCAGAGAAAAATGTGCTTAAAAGCCATGTTTAAA CTC |
| Conceptual translation |
MVNLTSMSGFLLMGFSDERKLQILHALVFLVTYLLALTGNLLIITIITVDRRLHSPMYYF LKHLSLLDLCFISVTVPQSIANSLMGNGYISLVQCILQVFFFIALASSEVAILTVMSYDR YAAICQPLHYETIMDPRACRHAVIAVWIAGGLSGLMHAAINFSIPLCGKRVIHQFFCDVP QMLKLACSYEFINEIALAAFTTSAAFICLISIVLSYIRIFSTVLRIPSAEGRTKVFSTCL PHLFVATFFLSAAGFEFLRLPSDSSSTVDLVFSVFYTVIPPTLNPVIYSLRNDSMKAALR KMLSKEELPQRKMCLKAMFKL Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 6 | 100 | -100 | SNP | T/C | 1000GP (YRI, YRI) | |
| 6 | 29,274,486 | 29,274,486 | NS | C/T | T/M | rs9257694 (DbSNP) |
| 6 | 29,275,228 | 29,275,228 | SYN | C/T | G/G | rs61735224 (DbSNP) |
| 6 | 29,275,298 | 29,275,298 | NS | A/G | M/V | rs17404424 (DbSNP) |
| 6 | 29,306,709 | 29,306,709 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 6 | 29,307,521 | 29,307,521 | SNP | G/A | 1000GP (CEU) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| M7T | K184T | V278M | R291W | % Freq | CORP | |
|---|---|---|---|---|---|---|
| 1 | M | K | V | R | 60.29 | 0.109 |
| 2 | T | K | V | R | 38.25 | 0.109 |
| 3 | T | K | M | R | 1.08 | 0.109 |
| 4 | M | K | V | W | 0.23 | 0.109 |
| 5 | M | T | V | R | 0.15 | 0.109 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR5U1.aApr07-unspliced | main_exon | CDS | chr6 | 29,306,690 | 29,307,652 | + |
| 3UTR | chr6 | 29,307,652 | 29,307,655 | + | ||