OR1AA1P Olfactory Receptor
| Gene Symbol | OR1AA1P1 (View this gene in GeneCards) |
| Family | 1 |
| Subfamily | AA |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsORX.1.4P, ORL4074 |
| External Ids | HGNC: 14750 GeneBank: NG_002238 ORDB: ORL4074 |
| Build #39 labels | OR1AA1P |
| Chromosomal location | X:131,424,301-131,425,268 (+) |
| Cluster | X@131a |
| Synteny | CLIC#48 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR1F1 | 50% | 310 |
| OR1J2 | 47.92% | 313 |
| OR1J4 | 48.06% | 310 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR1AG1P | 64% | 313 |
| Mouse | Or1aa2 | 69% | 312 |
| Rat | Or1aa2 | 67% | 313 |
| Cow | OR1AA3 | 66% | 313 |
| Orang | OR1F1 | 49% | 314 |
| Horse | OR1AA4P | 63% | 325 |
| Chimp | OR1F1P | 51% | 306 |
Sequence information
| Nucleotide sequence |
ATGCACCAAGGAAATTGAACTACTGTCTCTAAATTCTTTCTCCTGGGAATCACAACAAAG CCTAAAGAGCAGCAGTTTATCTTCATGCTGTTTCTATGCACGTATCTGGTCACTATGGTA AGAAATTTACTTATCATCCTGGCCGTTGTCAGTGATGCTCACCTCCATGGCCCCATATAT TTCTTCCTTGCCAATCTATCTTTCACTAACGTCTGCATCACAACCACTACAGTCCCCAAA ATCTTGGCAGATATTCAAAGCCAGAATTCAACCATATCCTTTGAAGGATGCCCTGCACAA ATGTAGTTTTAAATATTCCTGGTGGATCTGGATAATTTCCTATTGGTAGACATGGCATAT AATTGATACATTGCCATCTGTCACCCATTACACTATATGTGGTAGTACTGAGTCCCAAGA ACTGTGCCCTGTTGGTTGTGACTCCATGGGTTATCTCCAACCTTGTCTCAATACTGCATC TCAGTCTGCTAAGCCACTTAACTTTCTGTGATTTCACATATCTTCTATGACCTGGAACCC ATTTTAGGGCTTGCTTGCTCAGACACCCAAATCAACAACTTGATAATTACTGCCATTGGG GAAGTAGTTATCTTCATCCCCTTTACCTTCACATTCTTGTCTCCTATGGCCTTATTGGCA GCACTATGCTTGGAGTTCCATCAGCCAAGGGGAAGTAGAAAACATTCTCTACATGTGGTT CCCATCTCTCAGTTGTGCCCCAGGTCTTCTATGGGTTCATCATTGGAGTCTACTTTCTCT CCTTTTTTGCCTACTCAGCAGAAAGGGATGAGGTAGCTGCTATCATGTATACAACTGTAA CTCACTTGATCAAATCATTTATCTGTAGTCTAAGGAACGAGGACATGAAAGGAGCACTGA GGAGACCACTCAGCAGACAAGGTTTTTCTGGAGTGGTGAGCCCTGCCATAGAGATTCTCG TATTAACC |
| Conceptual translation |
MHQGNXTVSKFFLLGITTKPKEQQFIFMLFLCTYLVTMVRNLLIILAVVSDAHLHGPIY FFLANLSFTNVCITTTTVPKILADIQSQNSTISFEGCPAQMXXFLVDLDNFLLVDMAY NXIAICHPLHY/VVVLSPKNCALLVVTPWVISNLVSILHLSLLSHLTFC\SHIFYDL EPILGLACSDTQINNLIITAIGEVVIFIPFT/HILVSYGLIGSTMLGVPSAKGKXTFS TCGSHLSVVPQVFYGFIIGVYFLSFFAYSAERDEVAAIMYTTVTHLIKSFICSLRNEDMK GALRRPLSRQGFSGVVSPAIEILVLT Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| X | 130,558,375 | 130,558,375 | SNP | C/T | rs56079051 (DbSNP) | |
| X | 130,558,782 | 130,558,782 | SNP | A/G | rs17276881 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 145 (Hasin) | |||
| X | 130,558,175 | 130,561,242 | Deletion | #322 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.