OR1AB1P Olfactory Receptor
| Gene Symbol | OR1AB1P1 (View this gene in GeneCards) |
| Family | 1 |
| Subfamily | AB |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR19.4.6P, ORL3786 |
| External Ids | HGNC: 15390 ORDB: ORL3786 |
| Build #39 labels | OR1AB1P |
| Chromosomal location | 19:16,051,977-16,052,715 (+) |
| Cluster | 19@16c |
| Synteny | CLIC#46 |
| Remarks | Disrupted by Alu repeat |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR7A10 | 44.72% | 199 |
| OR7A17 | 46.7% | 197 |
| OR7D4 | 45.23% | 199 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR1AB2 | 65% | 199 |
| Mouse | Or1ab2 | 61% | 199 |
| Rat | Or1f21 | 45% | 199 |
| Cow | OR1AB2 | 64% | 199 |
| Orang | OR7A17B | 47% | 197 |
| Horse | OR1AB17 | 65% | 200 |
| Chimp | OR7D4B | 46% | 197 |
Sequence information
| Nucleotide sequence |
ACTCACAGTCAAGACCTTCCGTCTGGTAATCTGGTAACATCTTGCCTGGGTCTCTGAGTT TCTACTCTTGGGCCTCTTGGAGGAACTCATGCTCATCCTCTTCCTGAGCATATTCCTGGT CACTGGGCTGAAGAACCTGCTCATCCCTGCTCATCATCCCAGCCATTGCCACTGACACCC GGCTCTCTGTGCTCGTGCGCTTTTTCCTTGCCAACCTGGCCTTCGTGGTCACTTGCTTCA CCTCCACCACCATCCCCAAGATGCTGGACGTGCAAAGAGATCCCTTGTGTCATGTCAGGA TGCAAAGGGATTCCTTATGCTGGTTGCCTGACCCAGATGCTCTTCTTCATCTGTTAGGCA TCCACAGCTTCCTGCTGACTGCAATGGCCAATGAACACTGTGTGGCCATCTGTCACTCTC TGAACTCCATCAGGTCTGTGACACCATAGCTCTGTGGCCTCCTGGTGGTGGCCTCCTGGA CCTTCGCATTCAGGAATGCCCTGACCCACCCAGTGTTACTGACCCGCCTCTCACTCTGCA CCTACGAGTGGGTCAGCCATGTCTTCTGCAACCTCAGCCAGCTGCTGAAGTTGGCCTGCT CAGACGCCACTCTCAACAATGTGACGGTGCA |
| Conceptual translation |
WVSEFLLLGLLEELMLILFLSIFLVTGLKNLLILLIIPAIATDTRLSVLVRFFLANLAFV VTCFTSTTIPKML\CKEIPCVMSGCKGIPYAGCLTQMLFFI/LGIHSFLLTAMANEHC VAICHSLNSIRSVTPXCGLLVVASWTFAFRNALTHPVLLTRLSLCTYEWVSHVFCNLSQ LLKLACSDATLNNVTVQ Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 19 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI) | |
| 19 | 16,052,354 | 16,052,354 | SNP | G/A | 1000GP (CEU) | |
| 19 | 16,052,368 | 16,052,368 | SNP | C/T | 1000GP (CEU) | |
| 19 | 16,162,807 | 16,162,807 | SNP | G/T | rs7248209 (DbSNP) | |
| 19 | 16,162,952 | 16,162,952 | SNP | A/G | rs71334795 (DbSNP) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.