OR1AB1P Olfactory Receptor
Gene Symbol | OR1AB1P1 (View this gene in GeneCards) |
Family | 1 |
Subfamily | AB |
Pseudogene | Yes |
CORP pseudogene probability score | |
Aliases | HsOR19.4.6P, ORL3786 |
External Ids | HGNC: 15390 ORDB: ORL3786 |
Build #39 labels | OR1AB1P |
Chromosomal location | 19:16,051,977-16,052,715 (+) |
Cluster | 19@16c |
Synteny | CLIC#46 |
Remarks | Disrupted by Alu repeat |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR7A10 | 44.72% | 199 |
OR7A17 | 46.7% | 197 |
OR7D4 | 45.23% | 199 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR1AB2 | 65% | 199 |
Mouse | Or1ab2 | 61% | 199 |
Rat | Or1f21 | 45% | 199 |
Cow | OR1AB2 | 64% | 199 |
Orang | OR7A17B | 47% | 197 |
Horse | OR1AB17 | 65% | 200 |
Chimp | OR7D4B | 46% | 197 |
Sequence information
Nucleotide sequence |
ACTCACAGTCAAGACCTTCCGTCTGGTAATCTGGTAACATCTTGCCTGGGTCTCTGAGTT TCTACTCTTGGGCCTCTTGGAGGAACTCATGCTCATCCTCTTCCTGAGCATATTCCTGGT CACTGGGCTGAAGAACCTGCTCATCCCTGCTCATCATCCCAGCCATTGCCACTGACACCC GGCTCTCTGTGCTCGTGCGCTTTTTCCTTGCCAACCTGGCCTTCGTGGTCACTTGCTTCA CCTCCACCACCATCCCCAAGATGCTGGACGTGCAAAGAGATCCCTTGTGTCATGTCAGGA TGCAAAGGGATTCCTTATGCTGGTTGCCTGACCCAGATGCTCTTCTTCATCTGTTAGGCA TCCACAGCTTCCTGCTGACTGCAATGGCCAATGAACACTGTGTGGCCATCTGTCACTCTC TGAACTCCATCAGGTCTGTGACACCATAGCTCTGTGGCCTCCTGGTGGTGGCCTCCTGGA CCTTCGCATTCAGGAATGCCCTGACCCACCCAGTGTTACTGACCCGCCTCTCACTCTGCA CCTACGAGTGGGTCAGCCATGTCTTCTGCAACCTCAGCCAGCTGCTGAAGTTGGCCTGCT CAGACGCCACTCTCAACAATGTGACGGTGCA |
Conceptual translation |
WVSEFLLLGLLEELMLILFLSIFLVTGLKNLLILLIIPAIATDTRLSVLVRFFLANLAFV VTCFTSTTIPKML\CKEIPCVMSGCKGIPYAGCLTQMLFFI/LGIHSFLLTAMANEHC VAICHSLNSIRSVTPXCGLLVVASWTFAFRNALTHPVLLTRLSLCTYEWVSHVFCNLSQ LLKLACSDATLNNVTVQ Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
19 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI) | |
19 | 16,052,354 | 16,052,354 | SNP | G/A | 1000GP (CEU) | |
19 | 16,052,368 | 16,052,368 | SNP | C/T | 1000GP (CEU) | |
19 | 16,162,807 | 16,162,807 | SNP | G/T | rs7248209 (DbSNP) | |
19 | 16,162,952 | 16,162,952 | SNP | A/G | rs71334795 (DbSNP) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.