OR1D4 Olfactory Receptor
Gene Symbol | OR1D41 (View this gene in GeneCards) |
Family | 1 |
Subfamily | D |
Pseudogene | No |
CORP pseudogene probability score | |
Aliases | OR17-30, HsOR17.1.8P, ORL33, ORL1017 |
External Ids | HGNC: 8185 ORDB: ORL33, ORL1017 |
Build #39 labels | OR1D4 |
Chromosomal location | 17:3,240,676-3,241,611 (+) |
Cluster | 17@3b |
Synteny | CLIC#39 |
Remarks |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR1D5 | 98.4% | 312 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR1D3P | 81% | 311 |
Mouse | Or1d2 | 80% | 310 |
Rat | Or1d2 | 79% | 310 |
Cow | OR1D3B | 80% | 311 |
Cow | OR1D3 | 81% | 302 |
Orang | OR1D5 | 88% | 312 |
Horse | OR1D3 | 81% | 311 |
Chimp | OR1D4B | 95% | 312 |
Expression evidences
Source | Accession |
---|---|
mRNA | BC122528 |
Sequence information
Nucleotide sequence |
ATGGATGGAGATAACCAGAGTGAGAACTCACAGTTCCTTCTCCTGGGGATCTCAGAGAGT CCTGAGCAGCAGCAGATCCTGTTTTGGATGTTCCTGTCCATGTACCTGGTCACGGTGCTG GGAAATGTGCTCATCATCCTGGCCATCAGCTCTGATTCCCACCTGCACACCCCCATGTAC TTCTTCCTGGCCAACCTCTCCTTCACTGACCTCTTCTTTGTCACCAACACAATCCCCAAG ATGCTGGTGAACTTCCAGTCCCAGAACAAAGCCATCTCCTATGCAGGGTGTCTGACACAG CTCTACTTCCTGGTCTCCTTGGTGACCCTGGACAACCTCATCCTGGCCGTGATGGCGTAT GATCGCTATGTGGCCATCTGCTGCCCCCTCCACTATGTCACAGCCATGAGCCCTGGGCTC TGTGTCTTGCTCCTCTCCTTGTGTTGGGGGCTGTCTGTTCTCTATGGCCTCCTCCTCACC TTCCTCCTGACCAGGGTGACCTTCTGTGGGCCTTGAGAGATCCACTACCTCTTCTGTGAC ATGTACATCCTGCTGTGGCTGGCATGTTCCAACACCCACATCATTCACACAGTGTTGATT GCCACTGGCTGCTTCATCTTCCTCACCCCCTTAGGGTTCATGACCACATCCTATGTACGT ATTGTCAGAACCATCCTTCAAATGCCCTCAGCCTCTAAGAAATACAAAACCTTCTCTACC TGTGCCTCCCATTTGGGTGTGGTCTCCCTCTTTTATGGGATGCTTGCTATGGTGTACCTG CAGCCCCTCCATACCTACTCCATGAAGGACTCAGTAGCCACAGTGATGTATGCTGTGCTG ACACCTATGATGAACCCTTTCATCTACAGGCTGAGGAACAAAGACATGCATGGGGCTCCG GGAAGAGTCCTATGGAGACCCTTTCAGAGGCCTAAA |
Conceptual translation |
MDGDNQSENSQFLLLGISESPEQQQILFWMFLSMYLVTVLGNVLIILAISSDSHLHTPMY FFLANLSFTDLFFVTNTIPKMLVNFQSQNKAISYAGCLTQLYFLVSLVTLDNLILAVMAY DRYVAICCPLHYVTAMSPGLCVLLLSLCWGLSVLYGLLLTFLLTRVTFCGPXIHYLFCD MYILLWLACSNTHIIHTVLIATGCFIFLTPLGFMTTSYVRIVRTILQMPSASKKYKTFST CASHLGVVSLFYGMLAMVYLQPLHTYSMKDSVATVMYAVLTPMMNPFIYRLRNKDMHGAP GRVLWRPFQRPK Protein domains and features |
Variations - CNVs
Chr | Start | End | Type | Sources |
---|---|---|---|---|
17 | 3,018,447 | 3,159,865 | CopyNumber | Variation_2217 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
A242T | % Freq | CORP | |
---|---|---|---|
1 | A | 99.16 | 1.200 |
2 | T | 0.84 | 1.200 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
Accession | Type | Chr | Start | End | Strand | |
---|---|---|---|---|---|---|
LOC653166.aApr07-unspliced | main_exon | 5UTR | chr17 | 3,240,622 | 3,240,676 | + |
CDS | chr17 | 3,240,676 | 3,241,611 | + | ||
3UTR | chr17 | 3,241,611 | 3,241,614 | + |