OR1F2P Olfactory Receptor
| Gene Symbol | OR1F2P1 (View this gene in GeneCards) |
| Family | 1 |
| Subfamily | F |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OLFMF2, OR16-3, HsOR16.1.2P |
| External Ids | HGNC: 8196 GeneBank: AF399558, BK004665, HSAJ03145, HSHTPRX13, NR_002169 |
| Build #39 labels | OR1F2 |
| Chromosomal location | 16:3,215,566-3,216,546 (+) |
| Cluster | 16@3 |
| Synteny | CLIC#38 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR1F1 | 81.31% | 305 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR1F1P | 75% | 303 |
| Mouse | Or1f19 | 74% | 307 |
| Rat | Or1f21 | 76% | 301 |
| Cow | OR1F1BP | 79% | 301 |
| Orang | OR1F2 | 86% | 318 |
| Orang | OR1F2B | 83% | 305 |
| Horse | OR1F1 | 79% | 305 |
| Chimp | OR1F1P | 84% | 296 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | BG193339 |
| mRNA | X64987 |
| GNF Atlas2 | 217308_at |
Sequence information
| Nucleotide sequence |
GTATGTTTCTGAATTCACTGTCTTCTATGCAGCTGGGTCCAGACATATGAGAGGGACAAA CCAGTGAGTGTCTCCGAGTTCCTCCTCTTGGGACTCTCCAGGCAGCCCCAGCAGCAGCAT CTCCTCTTTGTGTTCTTCCTCAGCATGTACCTGGCCACTGTCCTGGGGAACCTGCTCATC ATCCTGGCCATAAGCATAGACTCCCGCCTGCACACCCCCATGTACTTCTTCCTCAGCAAC ATGTCCTTTGTGGACAACTGCTTCTCCACCACCGTCCCCAAGATGCTGGCCAATCACATA CTCAGGACTCAAACCATCTCCTTCTCTGGCTGTCTCATGCAGATGTATTTTATCAGTGAG CTTGCTGACATGGACAATTTCCTCCTGGCTGTGATGGCCTATGACCGCTTTGTCGCCGTG TGCCGCCCCTTACATTACACAGCAAAGATGACCCATCAGCTCTGTGCCCTGCTGGTCACT GGATCATGGGTGGTTGCCAACTCGAATGCTCTGCTGCACACCCTGCTGATGGCTCGACTC TCATTCTGTGCAGACAACACCATCCCCCACATCTTCTGCGATGTGACTCCCCTCCTGAAA CTCTCCTGTTCAGACACACACCTCAGTGAAGTGATGATTCTTACTGAGGCTGCCCTAGTC ACGATCACCCCATTTCTTTGCCTCCTGGCTTCCTATATGCACATCACCTGCGTTGTCCTG AGGGTCCCATCCACAAAGGGAAGATGGAAAGCCTTCTCCACCTGTGGCTCCCACCTGGCT GTGGTTCTCCTCTTCTATGGCACCATCATGTCTCCATATTTCAGAACTTCATCCTCCCAC TCAGCTCAGAGAGATATAGCAGCTGCTGTGAGGTTCACAGTGGTGACTCCCGTGATGAAT CCTTTGATCTACAGCCTGAGGAACAAGGACATAAAAGGGGCTCTTGTAAAAGTGGTTGCT GTGAAATTTTTTTCTGTTCAA |
| Conceptual translation |
VCFXHCLLCSWVQTYERDKPVSVSEFLLLGLSRQPQQQHLLFVFFLSMYLATVLGNLLI ILAISIDSRLHTPMYFFLSNMSFVDNCFSTTVPKMLANHILRTQTISFSGCLMQMYFISE LADMDNFLLAVMAYDRFVAVCRPLHYTAKMTHQLCALLVTGSWVVANSNALLHTLLMARL SFCADNTIPHIFCDVTPLLKLSCSDTHLSEVMILTEAALVTITPFLCLLASYMHITCVVL RVPSTKGRWKAFSTCGSHLAVVLLFYGTIMSPYFRTSSSHSAQRDIAAAVRFTVVTPVMN PLIYSLRNKDIKGALVKVVAVKFFSVQ Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 16 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI) | |
| 16 | 3,215,854 | 3,215,854 | SNP | G/A | 1000GP (CEU) | |
| 16 | 3,216,071 | 3,216,071 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 16 | 3,216,265 | 3,216,265 | SNP | C/T | 1000GP (CHBJPT) | |
| 16 | 3,265,839 | 3,265,839 | SNP | A/G | rs61743528 (DbSNP) | |
| 16 | 3,265,854 | 3,265,854 | SNP | A/G | rs61743522 (DbSNP) | |
| 16 | 3,265,990 | 3,265,990 | SNP | C/G | rs61741634 (DbSNP) | |
| 16 | 3,266,053 | 3,266,053 | SNP | C/G | rs61748940 (DbSNP) | |
| 16 | 3,266,071 | 3,266,071 | SNP | A/G | rs2550401 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 16 | 3,202,782 | 3,309,413 | CopyNumber | Variation_4921 (DGV) |
| 16 | 3,257,868 | 3,301,897 | CopyNumber | Variation_49690 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR1F2.aApr07-unspliced | main_exon | 5UTR | chr16 | 3,215,551 | 3,215,566 | + |
| CDS | chr16 | 3,215,566 | 3,216,546 | + | ||
| 3UTR | chr16 | 3,216,546 | 3,216,549 | + | ||