Search Olfactory receptors

(e.g. OR1G1, AF087928, Segregating Pseudo)

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OR1F2P Olfactory Receptor

Gene Symbol OR1F2P1 (View this gene in GeneCards)
Family 1
Subfamily F
Pseudogene Yes
CORP pseudogene probability score
Aliases OLFMF2, OR16-3, HsOR16.1.2P
External Ids HGNC: 8196   GeneBank: AF399558, BK004665, HSAJ03145, HSHTPRX13, NR_002169   
Build #39 labels OR1F2
Chromosomal location 16:3,215,566-3,216,546 (+)
Cluster 16@3
Synteny CLIC#38
Remarks

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR1F1 81.31% 305

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR1F1P 75% 303
Mouse Or1f19 74% 307
Rat Or1f21 76% 301
Cow OR1F1BP 79% 301
Orang OR1F2 86% 318
Orang OR1F2B 83% 305
Horse OR1F1 79% 305
Chimp OR1F1P 84% 296

Expression evidences

Source Accession
ESTs BG193339
mRNA X64987
GNF Atlas2 217308_at

Sequence information

Nucleotide sequence GTATGTTTCTGAATTCACTGTCTTCTATGCAGCTGGGTCCAGACATATGAGAGGGACAAA
CCAGTGAGTGTCTCCGAGTTCCTCCTCTTGGGACTCTCCAGGCAGCCCCAGCAGCAGCAT
CTCCTCTTTGTGTTCTTCCTCAGCATGTACCTGGCCACTGTCCTGGGGAACCTGCTCATC
ATCCTGGCCATAAGCATAGACTCCCGCCTGCACACCCCCATGTACTTCTTCCTCAGCAAC
ATGTCCTTTGTGGACAACTGCTTCTCCACCACCGTCCCCAAGATGCTGGCCAATCACATA
CTCAGGACTCAAACCATCTCCTTCTCTGGCTGTCTCATGCAGATGTATTTTATCAGTGAG
CTTGCTGACATGGACAATTTCCTCCTGGCTGTGATGGCCTATGACCGCTTTGTCGCCGTG
TGCCGCCCCTTACATTACACAGCAAAGATGACCCATCAGCTCTGTGCCCTGCTGGTCACT
GGATCATGGGTGGTTGCCAACTCGAATGCTCTGCTGCACACCCTGCTGATGGCTCGACTC
TCATTCTGTGCAGACAACACCATCCCCCACATCTTCTGCGATGTGACTCCCCTCCTGAAA
CTCTCCTGTTCAGACACACACCTCAGTGAAGTGATGATTCTTACTGAGGCTGCCCTAGTC
ACGATCACCCCATTTCTTTGCCTCCTGGCTTCCTATATGCACATCACCTGCGTTGTCCTG
AGGGTCCCATCCACAAAGGGAAGATGGAAAGCCTTCTCCACCTGTGGCTCCCACCTGGCT
GTGGTTCTCCTCTTCTATGGCACCATCATGTCTCCATATTTCAGAACTTCATCCTCCCAC
TCAGCTCAGAGAGATATAGCAGCTGCTGTGAGGTTCACAGTGGTGACTCCCGTGATGAAT
CCTTTGATCTACAGCCTGAGGAACAAGGACATAAAAGGGGCTCTTGTAAAAGTGGTTGCT
GTGAAATTTTTTTCTGTTCAA
Conceptual translation VCFXHCLLCSWVQTYERDKPVSVSEFLLLGLSRQPQQQHLLFVFFLSMYLATVLGNLLI
ILAISIDSRLHTPMYFFLSNMSFVDNCFSTTVPKMLANHILRTQTISFSGCLMQMYFISE
LADMDNFLLAVMAYDRFVAVCRPLHYTAKMTHQLCALLVTGSWVVANSNALLHTLLMARL
SFCADNTIPHIFCDVTPLLKLSCSDTHLSEVMILTEAALVTITPFLCLLASYMHITCVVL
RVPSTKGRWKAFSTCGSHLAVVLLFYGTIMSPYFRTSSSHSAQRDIAAAVRFTVVTPVMN
PLIYSLRNKDIKGALVKVVAVKFFSVQ

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
16 100 -100 SNP A/G 1000GP (YRI, YRI)
16 3,215,854 3,215,854 SNP G/A 1000GP (CEU)
16 3,216,071 3,216,071 SNP A/G 1000GP (CEU, CHBJPT)
16 3,216,265 3,216,265 SNP C/T 1000GP (CHBJPT)
16 3,265,839 3,265,839 SNP A/G rs61743528 (DbSNP)
16 3,265,854 3,265,854 SNP A/G rs61743522 (DbSNP)
16 3,265,990 3,265,990 SNP C/G rs61741634 (DbSNP)
16 3,266,053 3,266,053 SNP C/G rs61748940 (DbSNP)
16 3,266,071 3,266,071 SNP A/G rs2550401 (DbSNP)

Variations - CNVs

Chr Start End Type Sources
16 3,202,782 3,309,413 CopyNumber Variation_4921 (DGV)
16 3,257,868 3,301,897 CopyNumber Variation_49690 (DGV)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.

AceView Gene Models

The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.

Accession Type Chr Start End Strand
OR1F2.aApr07-unspliced main_exon 5UTR chr16 3,215,551 3,215,566 +
CDS chr16 3,215,566 3,216,546 +
3UTR chr16 3,216,546 3,216,549 +