OR1J1 Olfactory Receptor
| Gene Symbol | OR1J11 (View this gene in GeneCards) |
| Family | 1 |
| Subfamily | J |
| Pseudogene | No |
| CORP pseudogene probability score | 0.09 (functional) |
| Aliases | OR9-18, hg32, HsOR9.6.1, ORL3232 |
| External Ids | HGNC: 8208 GeneBank: AB065716, AF399554, BK004452, NM_001004451 ORDB: ORL3232 |
| Build #39 labels | OR1J1 |
| Chromosomal location | 9:122,477,009-122,477,926 (-) |
| Cluster | 9@125 |
| Synteny | CLIC#21 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR1J2 | 75.16% | 306 |
| OR1J4 | 74.84% | 306 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR1J6P | 69% | 304 |
| Mouse | Or1j1 | 80% | 306 |
| Rat | Or1j1 | 81% | 306 |
| Cow | OR1J4C | 76% | 305 |
| Orang | OR1E1 | 61% | 305 |
| Horse | OR1J1B | 82% | 306 |
| Horse | OR1J1C | 80% | 306 |
| Chimp | OR1J1P | 96% | 306 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | DB285509 |
| mRNA | AB529234 |
| GNF Atlas2 | gnf1h10934_at |
Sequence information
| Nucleotide sequence |
ATGAGCCCTGAGAACCAGAGCAGCGTGTCCGAGTTCCTCCTCCTGGGCCTCCCCATCCGG CCAGAGCAGCAGGCCGTGTTCTTCGCCCTGTTCCTGGGCATGTACCTGACCACGGTGCTG GGGAACCTGCTCATCATGCTGCTCATCCAGCTAGACTCTCACCTTCACACCCCCATGTAC TTCTTCCTTAGCCACTTGGCCCTCACTGACATCTCCTTTTCATCTGTCACTGTCCCTAAG ATGCTGATGAACATGCAGACTCAGCACCTAGCCGTCTTTTACAAGGGATGCATTTCACAG ACATATTTTTTCATATTTTTTGCTGACTTAGACAGTTTCCTTATCACTTCAATGGCATAT GACAGGTATGTGGCCATCTGTCATCCTCTACATTATGCCACCATCATGACTCAGAGCCAG TGTGTCATGCTGGTGGCTGGGTCCTGGGTCATCGCTTGTGCGTGTGCTCTTTTGCATACC CTCCTCCTGGCCCAGCTTTCCTTCTGTGCTGACCACATCATCCCTCACTACTTCTGTGAC CTTGGTGCCCTGCTCAAGTTGTCCTGCTCAGACACCTCCCTCAATCAGTTAGCAATCTTT ACAGCAGCATTGACAGCCATTATGCTTCCATTCCTGTGCATCCTGGTTTCTTATGGTCAC ATTGGGGTCACCATCCTCCAGATTCCCTCTACCAAGGGCATATGCAAAGCCTTGTCCACT TGTGGATCCCACCTCTCAGTGGTGACTATCTATTATCGGACAATTATTGGTCTCTATTTT CTTCCCCCATCCAGCAACACCAATGACAAGAACATAATTGCTTCAGTGATATACACAGCA GTCACTCCCATGTTGAACCCATTCATTTACAGTCTGAGAAATAAAGACATTAAGGGAGCC CTAAGAAAACTCTTGAGT |
| Conceptual translation |
MSPENQSSVSEFLLLGLPIRPEQQAVFFALFLGMYLTTVLGNLLIMLLIQLDSHLHTPMY FFLSHLALTDISFSSVTVPKMLMNMQTQHLAVFYKGCISQTYFFIFFADLDSFLITSMAY DRYVAICHPLHYATIMTQSQCVMLVAGSWVIACACALLHTLLLAQLSFCADHIIPHYFCD LGALLKLSCSDTSLNQLAIFTAALTAIMLPFLCILVSYGHIGVTILQIPSTKGICKALST CGSHLSVVTIYYRTIIGLYFLPPSSNTNDKNIIASVIYTAVTPMLNPFIYSLRNKDIKGA LRKLLS Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 9 | 125,239,501 | 125,239,501 | nonsense SNP | G/T | C/* | rs45579335 (DbSNP) |
| 9 | 125,239,796 | 125,239,796 | NS | C/G | S/T | rs73567906 (DbSNP) |
| 9 | 125,239,553 | 125,239,553 | NS | C/T | C/Y | rs45629038 (DbSNP) |
| 9 | 125,240,017 | 125,240,017 | SYN | A/G | L/L | rs73558876 (DbSNP) |
| 9 | 122,477,222 | 122,477,222 | nonsense SNP | G/T | C/* | 1000GP (CEU) |
| 9 | 122,477,265 | 122,477,265 | NS | A/G | I/T | 1000GP (CHBJPT) |
| 9 | 122,477,517 | 122,477,517 | NS | G/C | T/S | 1000GP (CHBJPT) |
| 9 | 122,477,738 | 122,477,738 | SYN | A/G | L/L | 1000GP (CHBJPT) |
| 9 | 100 | -100 | NS | A/G | I/T | 1000GP (YRI, YRI, YRI) |
| 9 | 100 | -100 | SYN | A/G | L/L | 1000GP (YRI) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| C235* | I221T | Y218C | H172Y | T137S | Q23P | E11K | % Freq | CORP | |
|---|---|---|---|---|---|---|---|---|---|
| 1 | C | I | Y | H | T | Q | E | 91.63 | 0.123 |
| 2 | C | T | Y | H | S | Q | E | 3.69 | 0.123 |
| 3 | * | I | Y | H | T | Q | E | 1.61 | 1.200 |
| 4 | C | I | Y | H | T | Q | K | 1.15 | 0.123 |
| 5 | C | T | Y | H | T | Q | E | 0.92 | 0.123 |
| 6 | C | I | Y | H | T | P | E | 0.46 | 0.123 |
| 7 | C | I | Y | H | S | Q | E | 0.31 | 0.123 |
| 8 | C | I | Y | Y | T | Q | E | 0.15 | 0.123 |
| 9 | C | I | C | H | T | Q | E | 0.08 | 1.000 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR1J1.aApr07-unspliced | main_exon | 3UTR | chr9 | 122,476,958 | 122,477,009 | - |
| CDS | chr9 | 122,477,009 | 122,477,926 | - | ||