OR1M1 Olfactory Receptor
| Gene Symbol | OR1M11 (View this gene in GeneCards) |
| Family | 1 |
| Subfamily | M |
| Pseudogene | No |
| CORP pseudogene probability score | 0.04 (functional) |
| Aliases | OR19-5, OR19-6, HsOR19.2.3, ORL3389 |
| External Ids | HGNC: 8220 GeneBank: AB065925, AF399549, BK004269, NM_001004456 ORDB: ORL3389 |
| Build #39 labels | OR1M1 |
| Chromosomal location | 19:9,093,245-9,094,183 (+) |
| Cluster | 19@9b |
| Synteny | CLIC#42 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR1E1 | 55.48% | 310 |
| OR1F12 | 55.05% | 307 |
| OR1N1 | 56.31% | 309 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR1M1B | 88% | 313 |
| Mouse | Or1m1 | 85% | 313 |
| Rat | Or1m1 | 86% | 313 |
| Cow | OR1M10P | 78% | 305 |
| Orang | OR7D2 | 58% | 307 |
| Horse | OR1M1P | 85% | 313 |
| Horse | OR1M1BP | 83% | 313 |
| Chimp | OR1F1P | 57% | 303 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AB529309 |
| GNF Atlas2 | gnf1h11121_at |
Sequence information
| Nucleotide sequence |
ATGGAACCAAGAAACCAAACCAGTGCATCTCAATTCATCCTCCTGGGACTCTCAGAAAAG CCAGAGCAGGAGACGCTTCTCTTTTCCCTGTTCTTCTGCATGTACCTGGTCATGGTCGTG GGGAACCTGCTCATCATCCTGGCCATCAGCATAGACTCCCACCTCCACACCCCCATGTAC TTCTTCCTGGCCAACCTGTCCCTGGTTGATTTCTGTCTGGCCACCAACACCATCCCTAAG ATGCTGGTGAGCCTTCAAACCGGGAGCAAGGCCATCTCTTATCCCTGCTGCCTGATCCAG ATGTACTTCTTCCATTTCTTTGGCATCGTGGACAGCGTCATAATCGCCATGATGGCTTAT GACCGGTTCGTGGCCATCTGCCACCCATTGCACTACGCCAAGATCATGAGCCTACGCCTC TGTCGCCTGCTGGTCGGCGCCCTCTGGGCGTTTTCCTGCTTCATCTCACTCACTCACATC CTCCTGATGGCCCGTCTCGTTTTCTGCGGCAGCCATGAGGTGCCTCACTACTTCTGCGAC CTCACTCCCATCCTCCGACTTTCGTGCACGGACACCTCTGTGAATAGGATCTTCATCCTC ATTGTGGCAGGGATGGTGATAGCCACGCCCTTTGTCTGCATCCTGGCCTCCTATGCTCGC ATCCTTGTGGCCATCATGAAGGTCCCCTCTGCAGGCGGCAGGAAGAAAGCCTTCTCCACC TGCAGCTCCCACCTGTCTGTGGTTGCTCTCTTCTATGGGACCACCATTGGCGTCTATCTG TGTCCCTCCTCGGTCCTCACCACTGTGAAGGAGAAAGCTTCTGCGGTGATGTACACAGCA GTCACCCCCATGCTGAATCCCTTCATCTACAGCTTGAGGAACAGAGACCTGAAAGGGGCT CTCAGGAAGCTGGTCAACAGAAAGATCACCTCATCTTCC |
| Conceptual translation |
MEPRNQTSASQFILLGLSEKPEQETLLFSLFFCMYLVMVVGNLLIILAISIDSHLHTPMY FFLANLSLVDFCLATNTIPKMLVSLQTGSKAISYPCCLIQMYFFHFFGIVDSVIIAMMAY DRFVAICHPLHYAKIMSLRLCRLLVGALWAFSCFISLTHILLMARLVFCGSHEVPHYFCD LTPILRLSCTDTSVNRIFILIVAGMVIATPFVCILASYARILVAIMKVPSAGGRKKAFST CSSHLSVVALFYGTTIGVYLCPSSVLTTVKEKASAVMYTAVTPMLNPFIYSLRNRDLKGA LRKLVNRKITSSS Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 19 | 100 | -100 | NS | C/T | T/M | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI) |
| 19 | 100 | -100 | SYN | C/T | T/T | 1000GP (YRI, YRI, YRI) |
| 19 | 9,093,631 | 9,093,631 | SYN | A/G | P/P | 1000GP (CEU, CHBJPT) |
| 19 | 9,203,994 | 9,203,994 | NS | C/T | T/M | rs61738474 (DbSNP) |
| 19 | 9,204,307 | 9,204,307 | SYN | A/G | P/P | rs4804097 (DbSNP) |
| 19 | 9,204,358 | 9,204,358 | SYN | C/T | G/G | rs7259007 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 198 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| T28M | V43M | A94T | V113M | V127M | V170I | T193M | L248V | % Freq | CORP | |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | T | V | A | V | V | V | T | L | 95.24 | 0.158 |
| 2 | M | V | A | V | V | V | T | L | 1.77 | 0.158 |
| 3 | T | V | T | V | V | I | T | L | 1.54 | 0.158 |
| 4 | T | V | A | M | V | V | T | L | 0.61 | 0.158 |
| 5 | T | M | A | V | V | V | T | V | 0.38 | 0.093 |
| 6 | T | V | A | V | M | V | T | L | 0.23 | 0.158 |
| 7 | T | V | A | V | V | V | M | L | 0.15 | 0.158 |
| 8 | T | V | A | V | V | I | T | L | 0.08 | 0.158 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR1M1.aApr07-unspliced | main_exon | CDS | chr19 | 9,093,245 | 9,094,183 | + |
| 3UTR | chr19 | 9,094,183 | 9,094,186 | + | ||