OR1X1P Olfactory Receptor
| Gene Symbol | OR1X1P1 (View this gene in GeneCards) |
| Family | 1 |
| Subfamily | X |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR5.2.1P, ORL3134 |
| External Ids | HGNC: 15062 ORDB: ORL3134 |
| Build #39 labels | OR1X1P |
| Chromosomal location | 5:176,006,145-176,007,389 (+) |
| Cluster | 5@175 |
| Synteny | CLIC#0 |
| Remarks | Disrupted by Alu repeat |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR1X5P | 92.89% | 225 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR1X2 | 75% | 312 |
| Mouse | Or1x2 | 70% | 312 |
| Rat | Or1x2 | 68% | 310 |
| Cow | OR1AB2 | 50% | 306 |
| Orang | OR1D3 | 48% | 305 |
| Horse | OR1AB17 | 49% | 305 |
| Chimp | OR1X7P | 88% | 217 |
Expression evidences
| Source | Accession |
|---|---|
| GNF Atlas2 | gnf1h04492_at |
Sequence information
| Nucleotide sequence |
GGGGGTAAAGAGAATGAGACAGGAGTTGGCGAGTTCCTCTTGCTCAGCATCACCAGTGAC TCAGAGAAGCAGCAGGCCCTCTTCTGGCTCTTCCTGTGTATGCACTTAGTCACTGAGGCT GGAAACACACCCATCATCCTGGGCATCGGCTCCAACCCTCGCCTGCACACCCCCACGTAC TTCTTCACCCATCTCTCCTTTGTCAACATCTGCTTCATCACCAACCTGATCCCCAAGCTC CTGGTCAACCATGTGGCAGGAACAGGGATGATCTCTATGGACGATCTCTTCTCCCCAGTG CCTGACTCAGATGTACTTCCTCATCTCCTTTGCCAACGTGGACACCTTTCTGCTGGCCAT CATGGCACTGGACCACTATGTGGCCATCTGCAGCGCCCTGCGGTACTGCTCCATCATCAC CCCCGGCTCTGTCAGGGGCTGGCCGTGCTAGCGTGAGCAGGCTCCAGCCTCATCTCCCTG GTCCACACGGTCATCATGAGCAGACTGGCCTTCTGCTCCTCCGCCCAGATTTCACACTTC TACTGTGACGCCTACCTGCTCATGAAGATTGCCTGCTCACATACATGTCAATCAGCATGT GTTCCTGGGGGCCGTGGTCCTGTTCCTGGCTCCCTGTGCGCTCATCTTGGTCTCCTACAT CCGCATTGCTGCAGCCATCCTCCGGATTCCCTCTCCTACAAGAAGGCGCAAGGCATGTTC CATATGTAGCTCCCACCTGTCTCTGGTCACCCTGTTCTATGGAACTGTCCTGGGGATCTG CATATGACCCCCAGACTCCTTCTCAGCCCAGGACACCATAGCAACCATCATGTACACTGT GGTGACCTCTATGCTAAACCCCTTCATCTACAGTCTGATGAACAAGGAGGTCCAGGAGGC CGTGAGAAGGCTCTTCAGTAGGGGCTCACACTCATCATGGTGC |
| Conceptual translation |
GGKENETGVGEFLLLSITSDSEKQQALFWLFLCMHLVTEAGNTPIILGIGSNPRLHTPTY FFTHLSFVNICFITNLIPKLLVNHVAGTGMITISSPQCLTQMYFLISFANVDTFLLAIMA LDHYVAICSALRYCSIISPRLCQGLAVLAXGSSLISLVHTVIMSRLAFCSSAQISHFYC DAYLLMKIACSNIHVNQHVFLGAVVLFLAPCALILVSYIRIAAAILRIPSPTRRRKACSI CSSHLSLVTLFYGTVLGICIXPDSFSAQDTIATIMYTVVTSMLNPFIYSLMNKEVQEAV RRLFSRGSHSSWC Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 5 | 175,433,425 | 175,433,424 | Ins(2) | -/TT | rs35707333 (DbSNP) | |
| 5 | 175,433,594 | 175,433,593 | Ins(2) | -/TT | rs72092216 (DbSNP) | |
| 5 | 175,433,424 | 175,433,423 | Ins(2) | -/TT | rs35654165 (DbSNP) | |
| 5 | 175,433,435 | 175,433,434 | Ins(2) | -/TT | rs72284127 (DbSNP) | |
| 5 | 175,433,599 | 175,433,598 | Ins(6) | -/TTTTTT | rs56034362 (DbSNP) | |
| 5 | 175,433,876 | 175,433,876 | SNP | A/C | rs13358386 (DbSNP) | |
| 5 | 175,434,140 | 175,434,140 | SNP | A/C | rs71262952 (DbSNP) | |
| 5 | 175,433,212 | 175,433,212 | SNP | A/G | rs58518346 (DbSNP) | |
| 5 | 175,433,507 | 175,433,507 | SNP | A/G | rs57875594 (DbSNP) | |
| 5 | 175,433,193 | 175,433,193 | SNP | A/G | rs57989738 (DbSNP) | |
| 5 | 175,434,037 | 175,434,037 | SNP | A/T | rs71262950 (DbSNP) | |
| 5 | 175,434,062 | 175,434,062 | SNP | C/T | rs71262951 (DbSNP) | |
| 5 | 175,433,965 | 175,433,965 | SNP | C/T | rs55711720 (DbSNP) | |
| 5 | 175,433,993 | 175,433,993 | SNP | C/T | rs71262949 (DbSNP) | |
| 5 | 175,433,600 | 175,433,600 | SNP | G/T | rs7721007 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 5 | 175,346,628 | 175,764,368 | CopyNumber | Variation_2610 (DGV) |
| 5 | 175,405,378 | 175,752,902 | CopyNumber | Variation_3588 (DGV) |
| 5 | 175,346,790 | 175,757,716 | CopyNumber | Variation_8503 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.