OR2A20P Olfactory Receptor
| Gene Symbol | OR2A20P1 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | A |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR7-86, OR7-17 |
| External Ids | HGNC: 15413 GeneBank: AB065477, AB065610, AF399463, AF546392-AF546405, BK004757, NR_002157, NR_002158, U86282 |
| Build #39 labels | OR2A20 |
| Chromosomal location | 7:144,250,674-144,251,603 (-) |
| Cluster | 7@144 |
| Synteny | CLIC#16 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2A9P | 100% | 310 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR2A9 | 86% | 310 |
| Dog | OR2A9B | 85% | 310 |
| Mouse | Or2a20 | 81% | 310 |
| Rat | Or2a20 | 81% | 310 |
| Cow | OR2A5 | 79% | 307 |
| Orang | OR2A9 | 91% | 310 |
| Orang | OR2A42 | 89% | 310 |
| Horse | OR2A9 | 87% | 310 |
| Horse | OR2A9BP | 85% | 309 |
| Chimp | OR2A42 | 91% | 310 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | W03780 |
| mRNA | AB464440 |
Sequence information
| Nucleotide sequence |
ATGGTGAAAAATCAGACAATGGTCACAGAGTTCCTCCTACTGGGATTTCTCCTGGGCCCA AGGATTCAGATGCTCCTCTTTGGGCTCTTCTCCCTGTTCTATGTCTTCACCCTGCTGGGG AATGGGACCATCCTGGGGCTCATCTCACTGGACTCCAGACTCCACACCCCCATGTACTTC TTCCTCTCACACCTGGCCGTCGTCAACATCGCCTATGCCTGCAACACAGTGCCCCAGATG CTGGTGAACCTCCTGCATCCAGCCAAGCCCATCTCCTTTGCTGGCTGCATGACATAGACC TTTCTCTTTTTGAGTTTTGCACATACTGAATGCCTCCTGTTGGTGCTGATGTCCTACGAT CGGTACGTGGCCATCTGCCACCCTCTCCGATATTTCATCATCATGACCTGGAAAGTCTGC ATCACTCTGGCCATCACTTCCTGGACATGTGGCTCCCTCCTGGCTATGGTCCATGTGAGC CTCATCCTAAGACTGCCCTTTTGTGGGCCTCGTGAAATCAACCACTTCTTCTGTGAAATC CTGTCTGTCCTCAGGCTGGCCTGTGCTGATACCTGGCTCAACCAGGTGGTCATCTTTGCA GCCTGCATGTTCATCCTGGTGGGACCACTCTGCCTGGTGCTGGTCTCCTACTCACACATC CTGGCGGCCATCCTGAGGATCCAGTCTGGGGAGGGCCGCAGAAAGGCCTTCTCCACCTGC TCCTCCCACCTCTGCGTAGTGGGACTCTTCTTTGGCAGCGCCATCGTCATGTACATGGCC CCTAAGTCCCGCCATCCTGAGGAGCAGCAGAAGGTCCTTTTTCTATTTTACAGTTCTTTC AACCCGATGCTAAACCCCCTGATTTACAACCTGAGGAATGTAGAGGTCAAGGGTGCCCTG AGGAGAGCACTGTGCAAGGAAAGTCATTCC |
| Conceptual translation |
MVKNQTMVTEFLLLGFLLGPRIQMLLFGLFSLFYVFTLLGNGTILGLISLDSRLHTPMYF FLSHLAVVNIAYACNTVPQMLVNLLHPAKPISFAGCMTXFLFLSFAHTECLLLVLMSYD RYVAICHPLRYFIIMTWKVCITLAITSWTCGSLLAMVHVSLILRLPFCGPREINHFFCEI LSVLRLACADTWLNQVVIFAACMFILVGPLCLVLVSYSHILAAILRIQSGEGRRKAFSTC SSHLCVVGLFFGSAIVMYMAPKSRHPEEQQKVLFLFYSSFNPMLNPLIYNLRNVEVKGAL RRALCKESHS Protein domains and features |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 7 | 143,905,946 | 144,059,816 | CopyNumber | Variation_0726 (DGV), Variation_2110 (DGV) |
| 7 | 143,147,775 | 144,368,638 | CopyNumber | Variation_3708 (DGV) |
| 7 | 143,879,547 | 144,073,724 | CopyNumber | Variation_4571 (DGV) |
| 7 | 143,884,053 | 143,953,444 | CopyNumber | Variation_7612 (DGV) |
| 7 | 143,878,837 | 144,073,622 | CopyNumber | Variation_31398 (DGV) |
| 7 | 143,217,296 | 144,074,520 | CopyNumber | Variation_32962 (DGV) |
| 7 | 143,873,741 | 144,029,792 | Inversion | Variation_37282 (DGV) |
| 7 | 143,947,032 | 144,038,091 | Inversion | Variation_37283 (DGV) |
| 7 | 143,887,276 | 144,027,539 | CopyNumber | Variation_37567 (DGV) |
| 7 | 143,877,475 | 144,074,275 | CopyNumber | Variation_59622 (DGV) |
| 7 | 143,945,278 | 143,999,781 | Inversion | Variation_59845 (DGV) |
| 7 | 143,877,476 | 144,074,583 | CopyNumber | Variation_70058 (DGV) |
| 7 | 143,884,187 | 143,962,488 | CopyNumber | Variation_70061 (DGV) |
| 7 | 143,875,423 | 143,961,876 | CopyNumber | Variation_82237 (DGV), Variation_94936 (DGV) |
| 7 | 143,910,318 | 143,961,876 | CopyNumber | Variation_82238 (DGV) |
| 7 | 143,910,426 | 143,961,876 | CopyNumber | Variation_94938 (DGV) |
| CopyNumber | 244 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR2A9P.cApr07 | main_exon | 3UTR | chr7 | 144,250,042 | 144,250,674 | - |
| CDS | chr7 | 144,250,674 | 144,251,603 | - | ||
| 5UTR | chr7 | 144,251,603 | 144,254,696 | - | ||
| exon_5UTR | chr7 | 144,354,032 | 144,354,160 | - | ||
| exon_5UTR | chr7 | 144,355,338 | 144,355,368 | - | ||
| OR2A9P.eApr07 | main_exon | CDS_partial | chr7 | 144,251,265 | 144,251,603 | - |
| 5UTR | chr7 | 144,251,603 | 144,251,610 | - | ||
| exon_5UTR | chr7 | 144,254,434 | 144,254,696 | - | ||
| exon_5UTR | chr7 | 144,354,982 | 144,355,138 | - | ||
| OR2A9P.fApr07 | main_exon | CDS_partial | chr7 | 144,251,023 | 144,251,603 | - |
| 5UTR | chr7 | 144,251,603 | 144,251,610 | - | ||
| exon_5UTR | chr7 | 144,355,338 | 144,355,706 | - | ||
| OR2A9P.qApr07 | main_exon | CDS_partial | chr7 | 144,250,948 | 144,251,603 | - |
| 5UTR | chr7 | 144,251,603 | 144,251,610 | - | ||
| exon_5UTR | chr7 | 144,252,296 | 144,252,492 | - | ||
| exon_5UTR | chr7 | 144,253,533 | 144,253,588 | - | ||
| exon_5UTR | chr7 | 144,254,434 | 144,254,695 | - | ||
| OR2A9P.sApr07 | main_exon | CDS_partial | chr7 | 144,251,387 | 144,251,603 | - |
| 5UTR | chr7 | 144,251,603 | 144,251,610 | - | ||
| exon_5UTR | chr7 | 144,343,187 | 144,343,298 | - | ||
| exon_5UTR | chr7 | 144,349,104 | 144,349,443 | - | ||
| exon_5UTR | chr7 | 144,350,718 | 144,350,824 | - | ||
| exon_5UTR | chr7 | 144,355,338 | 144,355,400 | - | ||
| OR2A9P.tApr07 | main_exon | CDS_partial | chr7 | 144,251,369 | 144,251,603 | - |
| 5UTR | chr7 | 144,251,603 | 144,251,610 | - | ||
| exon_5UTR | chr7 | 144,311,591 | 144,311,704 | - | ||
| exon_5UTR | chr7 | 144,311,884 | 144,311,936 | - | ||
| exon_5UTR | chr7 | 144,343,187 | 144,343,298 | - | ||
| exon_5UTR | chr7 | 144,350,718 | 144,350,824 | - | ||
| exon_5UTR | chr7 | 144,355,338 | 144,355,529 | - | ||