OR2AF1P Olfactory Receptor
| Gene Symbol | OR2AF1P1 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | AF |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | ORL4072 |
| External Ids | HGNC: 14719 GeneBank: NG_002257 ORDB: ORL4072 |
| Build #39 labels | OR2AF1P, OR2AF2P |
| Chromosomal location | X:131,619,046-131,619,935 (+) |
| Cluster | X@131b |
| Synteny | CLIC#48 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR13K1P | 51.38% | 325 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR2AF4P | 62% | 303 |
| Mouse | Or13ae2 | 47% | 299 |
| Rat | Or2b2 | 44% | 299 |
| Cow | OR2AF5P | 70% | 302 |
| Orang | OR13K1P | 48% | 342 |
| Horse | OR2AF6P | 64% | 303 |
| Chimp | OR13K1 | 54% | 276 |
Sequence information
| Nucleotide sequence |
ATGACTGAACTCATCCTTGTTGGATTTGCCCAACACCCTGAAATCCAGACTGCCTTCTTC TTGGAACTACTGTTTTTCTACTAGTCACAGCGTTTGAGAACATCCTTATCGTTGCTGTAG TGAGATGAGATTCTCGACTTCATACTCCTATGGGATTTTTTTTTCCTCAGTACCTTATCC TCCCTTGAAATGTGTTACTCCATCAGCTGGGAGCTATAAGTCTTGGCTCAATGCATCAAG GACTTCCCCACCATCTCCTATAACAGCTGTTCTGTTCAGATGATCACACACCTCTTTCTG GGGATGACAGTGTCTCCTCCTTGCTGGCATGGCTTACAACAGGTTTGTTGAAATCTCTTA TCTCCTCCATTACACTATTATTATGAGCAATCGGGTCTGTATACAGTTGGCCTTGGGAAT CTGGACCCATGCCTTCTTAGTAGCAGTCACACTAATCATTGCAATTCCTGCTAGTTATTA TGGACACAATGTCATCAACCATTTTACCTTGAGATCCAGGCCCTGCTGAAGCTCGTCTGC TCAGACACCCTTGTCAGCCTGATTCAGGGTCTGGTTATCAGTGTGTTCACACTGCCCCTG CCCTTCACATTCATCCTCATCTCCTAATTTTGCATTTTTGTTGTGCTGTGGAGGCTAGGC GTGAAGCTTTCTCCACCTGTGGATCTCATCTGACTGGAGTCACCATATTTTATGGGGCAG CCATCTGCATGTACTTGAAACCTCAGTCAAAGGGAACCCAGGAAGAGGATAAAGTTGTCT CAAAACTTTATGGAGCAGTTACTCCCATGTTAAATCCCCCAATTTACATTCAGAGAAATA AGGATATAAAAGGTGCACTTAGAAAGTTAGCCAAAGGAAATGAAAAATCC |
| Conceptual translation |
MTELILVGFAQHPEIQTAFFLELLFFY/VTAFENILIVAVVRXSRLHTPMGFFF\ST LSSLEMCYSISWELXLAQCIKDFPTISYNSCSVQMITHLFLG/D/CLLLAGMAYNRF VEISYLLHYTIIMSNRVCIQLALGIWTHAFLVAVTLIIAIPASYYGHNVINHFT/EIQA LLKLVCSDTLVSLIQGLVISVFTLPLPFTFILISXCIFV/AVEARREAFSTCGSHLTG VTIFYGAAICMYLKPQSKGTQEEDKVVSKLYGAVTPMLNPPIYIQRNKDIKGALRKLAKG NEKS Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| X | 130,753,156 | 130,753,156 | SNP | A/T | rs5977524 (DbSNP) | |
| X | 130,753,416 | 130,753,416 | SNP | A/G | rs10521771 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 149 (Hasin) | |||
| X | 130,752,948 | 130,755,937 | Deletion | #324 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.