OR2AL1P Olfactory Receptor
| Gene Symbol | OR2AL1P1 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | AL |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | ORL3480 |
| External Ids | HGNC: 14712 GeneBank: NG_002273 ORDB: ORL3480 |
| Build #39 labels | OR2AL1P |
| Chromosomal location | 11:105,194,090-105,194,936 (-) |
| Cluster | 11@105 |
| Synteny | CLIC#0 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2J3 | 51.25% | 240 |
| OR2J4P | 47.01% | 251 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Mouse | Or2j3 | 44% | 252 |
| Rat | Or2j3 | 44% | 252 |
| Cow | OR2J3 | 48% | 241 |
| Orang | OR2J1 | 46% | 254 |
| Horse | OR2J3 | 50% | 242 |
| Chimp | OR2J3 | 51% | 241 |
Sequence information
| Nucleotide sequence |
ATGGGAAATATCAACATAAGTCTTGAAAATTACTTTATTCTACTGGGTCTTTCTAATTGA CCTCCTCTGGAAATAGTTATTTTTGTAGTTCTCTTGATATTCTGCTTCATGACACTGATA GGCAAGCTGTTCAGCATCATTCTGTCATACCTGGACTCCCATCCCCACACTCTCGGTACT TATTCTCTTTTCTGGATTTCTGCTACACCATCAGTTCCATCTTTTAATTACAGTACAATC TCTGGGGCCCACAGAAGAACATCTCTTATGCCAGTGGTATGATTCAAATTTATTTTGTTC TCACACTGGGAACCATGGATTGCGCTCTACTGGTGGTGATGTCCAGGACTGTGATGCAGC TGGACACAGACACTTGCCTTATACTGTTGTTATGGCTGTGGCTTTTTGGGTAAGTAGCTT TACCAACTCAGCATTTGATTCCTTTTTTACCTTCTGGGTAACCCTGTGTGGACATCACTA TTATGCTTACATCTTTATATTTACATCATTGTTAGTATAAAGATGGTTCATTAACAGAAA GAAACAGTCTGTGTTCTCACTGAATCATGCAGCTTTATTAACATTATCTTTTCCATTATA AAATGACTGCTTCCAGGAGATTGAAAAGAACATGTTAAGAAAAGCACAGCATTGGAGAAT CTGAAAGCATGTGATCTTGTTCAATTAAACCAAGTATCAAAAACATGCATTTTTATGAGA CTATTTTAGGAAATTCATCATTTAGAATGAGGTTAAATTATGAGGGGCAAAACAAAAATA AAAAATAATATTAACTTAAGTAAAATAAAAATTTATTTATCTCCCTCATAAAAAGAATTT CAAAGAT |
| Conceptual translation |
MGNINISLENYFILLGLSNXPLEIVIFVVLLIFCFMTLIGKLFSIILSYLDSHPHT/R YLFSFLDFCYTISSIFXQYNLWGPQKNISYASGMIQIYFVLTLGTMDCALLVVMS/DC DAAGHRHLPYTVVMAVAFWVSSFTNSAFDSFFTFWVTLCGHHYYAYIFIFTSLLVXW/ HXKETVCVLTESCSFINIIFSII\DCFQEIEKNMLR/STA/GESESMXCSIKPSI KNMHFYETILGNSSFRMRLNYEGQNK/XIILTXKXFIYLPHKKNFKD Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 105,065,025 | 105,065,024 | Ins(1) | -/G | rs34959466 (DbSNP) | |
| 11 | 105,065,425 | 105,065,425 | SNP | A/G | rs12287622 (DbSNP) | |
| 11 | 105,065,513 | 105,065,513 | SNP | A/G | rs12293654 (DbSNP) | |
| 11 | 105,065,485 | 105,065,485 | SNP | A/G | rs57774068 (DbSNP) | |
| 11 | 105,194,520 | 105,194,520 | SNP | C/G | 1000GP (CHBJPT) | |
| 11 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 103,964,790 | 105,346,058 | CopyNumber | Variation_8695 (DGV) |
| 11 | 105,049,805 | 105,066,898 | CopyNumber | Variation_38218 (DGV) |
| 11 | 105,049,306 | 105,068,980 | CopyNumber | Variation_86009 (DGV) |
| CopyNumber | 56 (Hasin) | |||
| 11 | 105,062,817 | 105,065,763 | Deletion | #277 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.