OR2AM1P Olfactory Receptor
| Gene Symbol | OR2AM1P1 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | AM |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR9.1.7P, ORL326 |
| External Ids | HGNC: 15113 GeneBank: NG_004255 ORDB: ORL326 |
| Build #39 labels | OR2AM1P |
| Chromosomal location | 9:36,021,711-36,022,115 (+) |
| Cluster | 9@36 |
| Synteny | CLIC#17 |
| Remarks | Coding for partial protein |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR13C6P | 63.76% | 149 |
| OR13C7P | 63.76% | 149 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR13C7H | 60% | 156 |
| Mouse | Or13c7 | 62% | 154 |
| Rat | Or13c7 | 63% | 153 |
| Cow | OR13C7 | 62% | 153 |
| Orang | OR13C6 | 63% | 150 |
| Horse | OR13C7M | 61% | 153 |
| Chimp | OR13C7 | 64% | 153 |
Expression evidences
| Source | Accession |
|---|---|
| GNF Atlas2 | gnf1h02241_at |
| GNF Atlas2 | gnf1h02242_s_at |
Sequence information
| Nucleotide sequence |
GGAGTTCTTGGCCCATCTGCCCTAAGGGAAGGGAAGAGACTAAATGTCATCAGTCACCTG CCCTTCTATGGGGACATCATCAACCACTTGACCTGTGAGGTCCTGGCTGTCCTGAAGTTG GCCTGTGCTGACATCTCTATCAACATGATCAGGCAAAAGGCCTTCTCCACCTGCTCTGCC CACCTCACAGTTGTGGTCATCTTCTACAGGACCATCCTCTTCACGCATGGGAAGCCCAAG TCGAAGGACCCACTGGGGGCAGACAAGCAGGATTTTGCAGACAAACTCATCTCCCTCTCC TATGGAGTGGTCACCCCCATGCTGAACACCATCATCTACAGCCTGAGGAAAAAGGGTGTG AAGGCTGCTGTGAAGAACCTGGTATTTCAGAAACCCCTAACTGAA |
| Conceptual translation |
GVLGPSALREGKRLNVISHLPFYGDIINHLTCEVLAVLKLACADISINMIRQKAFSTCSA HLTVVVIFYRTILFTHGKPKSKDPLGADKQDFADKLISLSYGVVTPMLNTIIYSLRKKGV KAAVKNLVFQKPLTE Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 9 | 36,021,852 | 36,021,852 | SNP | A/G | rs10511925 (DbSNP) | |
| 9 | 36,022,016 | 36,022,016 | SNP | C/G | rs73645976 (DbSNP) | |
| 9 | 36,022,050 | 36,022,050 | SNP | C/T | rs12685886 (DbSNP) | |
| 9 | 36,021,855 | 36,021,855 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 9 | 100 | -100 | SNP | C/A | 1000GP (YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 9 | 36,005,884 | 36,453,176 | CopyNumber | Variation_47924 (DGV) |
| 9 | 36,021,608 | 36,024,112 | CopyNumber | #114 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.