OR2AO1P Olfactory Receptor
| Gene Symbol | OR2AO1P1 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | AO |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR7.6.18P |
| External Ids | HGNC: 31247 GeneBank: NG_004409 |
| Build #39 labels | |
| Chromosomal location | 7:144,176,740-144,177,516 (+) |
| Cluster | 7@144 |
| Synteny | CLIC#16 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2A13P | 43.78% | 217 |
| OR2A5 | 51.66% | 151 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR2A13 | 62% | 129 |
| Mouse | Or2a52 | 57% | 129 |
| Rat | Or2a52 | 61% | 129 |
| Cow | OR2A13 | 60% | 129 |
| Orang | OR2BQ1P | 90% | 128 |
| Horse | OR2A5 | 57% | 129 |
| Chimp | OR2A13 | 61% | 129 |
Sequence information
| Nucleotide sequence |
ATGGGAGGCAAGCAGCCCTGGGTCACAGAATTCATCCTGGTGGGATTCCAGCTCTGTGCA GAGATGGAGATCTTTCTCTCTTGCATCTTCTCGCGATTTTATGCCTTCAGTCTACTGAGG AATGGCATGAACATGGGACTCACCTATCTGGATGACAGAGACGACAGACTACACACCCTC ATATACATTTTCCTCTCACACCTGGCCATCAATGACATGTACTATGCTTCCAACAATGTT CCAAAGAGGCAGGTGAACCAAATGAACCAGAAAAAAAAAACTTTGTTCTATGGATAAAGC AGATATTTTTGTATTTGGCTTTTGCTCACACAGAGTGCCTAATTTAGGCAATGATGTCCT GTAATAGATATGTGGCAATCTGCTAGATCTTTCTCCAACCCTTTACGTTGAGCCTATGGG TGTTGTTATGTGTGAGATGAGTCTCTTGAATATGGTAGACAGATGGGTCTTATTTTTTTA ATGCAAATTATCACTCTGTGCCATTTAAGTAGGCAATTAATCCACAGTTAATATTGGTAT GTGAGGATTTGATCCTGTCATGAAGATGTTAACTGGTTGCTTTGTGGTTTCTATTGTGTA GTTGCTTTACAGAATCTGTGGGCTATGTACTTAAGTGTGTTTTTGTAGTAGAAGACATCA TTCTTTTGTTTCCATGTTTAGAGCTCCCTTAAGGGTCTCTTGTAAACCCCGTCTAGTGGT AACACTTTCCCTTAGCACTTGCTTGTCTGGGAAAGATTTTATTTTTCCTTCATTTAT |
| Conceptual translation |
MGGKQPWVTEFILVGFQLCAEMEIFLSCIFSRFYAFSLLRNGMNMGLTYLDDRDDRLHTL IYIFLSHLAINDMYYASNNVPKRQVNQMNQKKKTLFYGXMQIFLYLAFAHTECLIXMM SCNRYVAICXFLQPFTLSLWVLLCVRXSXWXDGSYFFNANYHSVPFKXINPQLIL VCEDL\CHEDVNWLLCGFYCVVALQNLWAMYLSVFLXKTSFFCFHVXSLKGLLXPS SGNTFPXLLVWERFYFSFIY Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 7 | 143,874,112 | 143,874,111 | Ins(1) | -/A | rs72571583 (DbSNP) | |
| 7 | 143,874,104 | 143,874,103 | Ins(1) | -/A | rs67078403 (DbSNP) | |
| 7 | 143,874,114 | 143,874,113 | Ins(1) | -/A | rs66651552 (DbSNP) | |
| 7 | 143,874,113 | 143,874,112 | Ins(1) | -/A | rs61696785 (DbSNP) | |
| 7 | 143,874,190 | 143,874,190 | SNP | C/T | rs10487624 (DbSNP) | |
| 7 | 143,874,482 | 143,874,482 | mixed | -/A/G | rs6464583 (DbSNP) | |
| 7 | 144,177,097 | 144,177,097 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 7 | 144,177,389 | 144,177,389 | SNP | A/G | 1000GP (CEU) | |
| 7 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 7 | 143,147,775 | 144,368,638 | CopyNumber | Variation_3708 (DGV) |
| 7 | 143,217,296 | 144,074,520 | CopyNumber | Variation_32962 (DGV) |
| 7 | 143,873,741 | 144,029,792 | Inversion | Variation_37282 (DGV) |
| 7 | 143,545,719 | 143,874,190 | CopyNumber | Variation_53583 (DGV) |
| 7 | 143,873,733 | 143,876,609 | CopyNumber | #44 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.