OR2AS1P Olfactory Receptor
| Gene Symbol | OR2AS1P1 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | AS |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | ORL3060 |
| External Ids | HGNC: 15004 GeneBank: NG_004705, NG_004706 ORDB: ORL3060 |
| Build #39 labels | OR2AS1P |
| Chromosomal location | 1:248,549,422-248,549,903 (-) |
| Cluster | 1@248 |
| Synteny | CLIC#5 |
| Remarks | Disrupted by MIR repeat |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2AS2P | 100% | 98 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR2V1 | 51% | 101 |
| Mouse | Or2av9 | 52% | 111 |
| Rat | Or2av9 | 50% | 111 |
| Orang | OR2T27FP | 49% | 102 |
Sequence information
| Nucleotide sequence |
AGCCAGAATATGGGGATGAGAAAGGAACAAGCTGTCTGTGGTAGTCATCCATGATTGAGA TGATGTGTGGACCCTGAGTCAGACTACCTGGTTCAAATGCAGGCTCTCTACTTTTTACCC ATTTGATCTTGGCCTGTGGCTCTCTACTTCTTATCCATTTCATCTTGGACTTGTGGCCTC TCATACCTCATCTTCCTTACAGTCCTCCATATGAAATCCCCCTAAAGTAGGAACAAAGCT TTGGCCAACTGCTCCTCCCATCTTTCCGTGGTCTTTACTTAGGAACTGTGTGTTTAATAT ACGTGACACAGGGTTTCTCCCACATCCCTGAGCAGAAACAAGCTGTGTCTGTATTTTGCA CTGTACTCACCCCCATGCTAAACCCCCTCATCTACATCCTGAGAAACAAGGATGTGGTGG GGCTCTTCAGAAAGTTCTGGGAACACATCAAGTCTCTAAACAGAACACATAAATATCAAT GT |
| Conceptual translation |
SQNMGMRKEQA\VVVIHDXDVWTLSQTTWFKCRLSTFYPFDLGLWLSTSYPFHLGLVA SHT/IFLTVLHMKSPXRNKALANCSSHLS/GLYLGTVCLIYVTQGFSHIPEQKQAVS VFCTVLTPMLNPLIYILRNKDVVGLFRKFWEHIKSLNRTHKYQC Protein domains and features |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 1 | 248,687,510 | 248,865,377 | CopyNumber | Variation_0017 (DGV) |
| 1 | 248,644,944 | 248,790,408 | CopyNumber | Variation_0263 (DGV) |
| 1 | 248,701,948 | 248,877,423 | CopyNumber | Variation_2056 (DGV) |
| 1 | 248,595,681 | 248,817,382 | CopyNumber | Variation_2359 (DGV) |
| 1 | 248,500,109 | 248,865,374 | CopyNumber | Variation_3340 (DGV) |
| 1 | 248,060,959 | 249,167,690 | CopyNumber | Variation_8354 (DGV) |
| 1 | 248,522,680 | 249,158,239 | CopyNumber | Variation_8355 (DGV) |
| 1 | 248,242,528 | 248,817,382 | CopyNumber | Variation_8935 (DGV) |
| 1 | 248,626,918 | 248,830,541 | Inversion | Variation_37092 (DGV) |
| 1 | 248,646,428 | 248,728,407 | Inversion | Variation_59670 (DGV) |
| 1 | 248,703,193 | 248,795,305 | CopyNumber | Variation_75000 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.