OR2AT1P Olfactory Receptor
| Gene Symbol | OR2AT1P1 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | AT |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-264, HsOR11.16.3P, ORL3606 |
| External Ids | HGNC: 15145 GeneBank: AB065552, AF399470, BK004710, NG_004338 ORDB: ORL3606 |
| Build #39 labels | OR2AT1P |
| Chromosomal location | 11:75,131,103-75,131,872 (-) |
| Cluster | 11@75 |
| Synteny | CLIC#28 |
| Remarks | Disrupted by Alu repeat |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2AT2P | 86.56% | 253 |
| OR2AT4 | 83.4% | 253 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR2AT2 | 86% | 245 |
| Dog | OR2AT2B | 83% | 246 |
| Mouse | Or2at1 | 85% | 246 |
| Rat | Or2at1 | 84% | 246 |
| Cow | OR2AT2 | 83% | 251 |
| Cow | OR2AT2B | 82% | 246 |
| Cow | OR2AT2CP | 85% | 228 |
| Orang | OR2AT2P | 84% | 253 |
| Orang | OR2AT4 | 83% | 246 |
| Horse | OR2AT2 | 84% | 245 |
| Horse | OR2AT2EP | 84% | 246 |
| Horse | OR2AT2D | 82% | 246 |
| Chimp | OR2AT2P | 86% | 253 |
| Chimp | OR2AT4 | 84% | 246 |
Expression evidences
| Source | Accession |
|---|---|
| GNF Atlas2 | gnf1h10954_x_at |
| GNF Atlas2 | gnf1h10955_at |
Sequence information
| Nucleotide sequence |
CTTCTTAATCTATCCGCTTATCCTGGTGGGTAATGACCAGATCCTGGTGGTTGTGATGGC AGAGGCCAGCCTTCACAAGCCTGTGTACTTCTTCCTGATAAACCTCTCAGCCCTAGACAT CCTCTCCACTACAGTCACTGTCCCCAAGACGCTGCCCCTGTTCTTGCTTGGGGACCACTT CCTCAGCTTCCCTGCCTGCTTCCTACAGATGTACCTGTTCCACAGCTTCTCCTGCTCAGA AGCCTTCATCCTGGTGGTCATGGCCTATGACCGCTATGTAGCTATCTGCCACCCACTGCA ATACCCTGTTCTCATGAACCCACAGACCAATGCTGTCTTGGCAACCGGTGCCTGGCTCAC TGCCCTCCTCCTGCCCATTCCAGCAGTAGTACAGACCTCCCAGATGGCATTTGACAGCAT TGCTGACATCTACCACTGCTTCTGTGATCATCTGGCTGTGGTCCAGGCCTCCTGCTCTGA TACCACCCCCAGACCTTCATGGGTTTCTGCATCGCCATGGTGGTGTCCTTCCTCCCCCTT CTCCTGGTGCTTCTCTCCTATGCCCACATCTTGACCTCGGTGCTTCGCATTAACTCCCAA GAAGGACGCTCCAAAGCCTTCTCCACCTGCAGCTCCCATCTCCCGGTAGTGGGCACCTAC TACTCATCCATTGCCATAGCCTATGTGGCCTACAGCGCTGACCTGCCCCTCGACTTCCAC GTCATGGGCAATGTTGTACATGTCTTCTTCTTCCTCTTCTTCTTCTTCTT |
| Conceptual translation |
FLIYPLILVGNDQILVVVMAEASLHKPVYFFLINLSALDILSTTVTVPKTLPLFLLGDHF LSFPACFLQMYLFHSFSCSEAFILVVMAYDRYVAICHPLQYPVLMNPQTNAVLATGAWLT ALLLPIPAVVQTSQMAFDSIADIYHCFCDHLAVVQASCSDT/PQTFMGFCIAMVVSFLP LLLVLLSYAHILTSVLRINSQEGRSKAFSTCSSHLPVVGTYYSSIAIAYVAYSADLPLDF HVMGNVVH/LLLPLLLLL Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 74,842,164 | 74,842,163 | Ins(3) | -/AGA | rs58679683 (DbSNP) | |
| 11 | 74,842,437 | 74,842,437 | SNP | A/G | rs11236344 (DbSNP) | |
| 11 | 74,842,836 | 74,842,836 | SNP | A/G | rs12279394 (DbSNP) | |
| 11 | 74,842,779 | 74,842,779 | SNP | A/G | rs2712794 (DbSNP) | |
| 11 | 74,842,207 | 74,842,207 | SNP | A/G | rs2712792 (DbSNP) | |
| 11 | 74,842,627 | 74,842,627 | SNP | C/T | rs4245441 (DbSNP) | |
| 11 | 74,842,530 | 74,842,530 | SNP | C/T | rs2712793 (DbSNP) | |
| 11 | 74,842,197 | 74,842,197 | SNP | T/C | rs2851097 (DbSNP) | |
| 11 | 74,842,617 | 74,842,617 | SNP | T/G | rs2851096 (DbSNP) | |
| 11 | 75,131,152 | 75,131,152 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 75,131,162 | 75,131,162 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 75,131,572 | 75,131,572 | SNP | T/G | 1000GP (CEU, CHBJPT) | |
| 11 | 75,131,582 | 75,131,582 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 75,131,734 | 75,131,734 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 75,131,791 | 75,131,791 | SNP | A/G | 1000GP (CEU) | |
| 11 | 75,131,803 | 75,131,803 | SNP | G/C | 1000GP (CEU) | |
| 11 | 75,131,485 | 75,131,485 | SNP | T/C | 1000GP (CHBJPT) | |
| 11 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 213 (Hasin) | |||
| 11 | 74,840,148 | 74,843,017 | Deletion | #276 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.