Search Olfactory receptors

(e.g. OR1G1, AF087928, Segregating Pseudo)

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OR2AT1P Olfactory Receptor

Gene Symbol OR2AT1P1 (View this gene in GeneCards)
Family 2
Subfamily AT
Pseudogene Yes
CORP pseudogene probability score
Aliases OR11-264, HsOR11.16.3P, ORL3606
External Ids HGNC: 15145   GeneBank: AB065552, AF399470, BK004710, NG_004338   ORDB: ORL3606   
Build #39 labels OR2AT1P
Chromosomal location 11:75,131,103-75,131,872 (-)
Cluster 11@75
Synteny CLIC#28
Remarks Disrupted by Alu repeat

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR2AT2P 86.56% 253
OR2AT4 83.4% 253

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR2AT2 86% 245
Dog OR2AT2B 83% 246
Mouse Or2at1 85% 246
Rat Or2at1 84% 246
Cow OR2AT2 83% 251
Cow OR2AT2B 82% 246
Cow OR2AT2CP 85% 228
Orang OR2AT2P 84% 253
Orang OR2AT4 83% 246
Horse OR2AT2 84% 245
Horse OR2AT2EP 84% 246
Horse OR2AT2D 82% 246
Chimp OR2AT2P 86% 253
Chimp OR2AT4 84% 246

Expression evidences

Source Accession
GNF Atlas2 gnf1h10954_x_at
GNF Atlas2 gnf1h10955_at

Sequence information

Nucleotide sequence CTTCTTAATCTATCCGCTTATCCTGGTGGGTAATGACCAGATCCTGGTGGTTGTGATGGC
AGAGGCCAGCCTTCACAAGCCTGTGTACTTCTTCCTGATAAACCTCTCAGCCCTAGACAT
CCTCTCCACTACAGTCACTGTCCCCAAGACGCTGCCCCTGTTCTTGCTTGGGGACCACTT
CCTCAGCTTCCCTGCCTGCTTCCTACAGATGTACCTGTTCCACAGCTTCTCCTGCTCAGA
AGCCTTCATCCTGGTGGTCATGGCCTATGACCGCTATGTAGCTATCTGCCACCCACTGCA
ATACCCTGTTCTCATGAACCCACAGACCAATGCTGTCTTGGCAACCGGTGCCTGGCTCAC
TGCCCTCCTCCTGCCCATTCCAGCAGTAGTACAGACCTCCCAGATGGCATTTGACAGCAT
TGCTGACATCTACCACTGCTTCTGTGATCATCTGGCTGTGGTCCAGGCCTCCTGCTCTGA
TACCACCCCCAGACCTTCATGGGTTTCTGCATCGCCATGGTGGTGTCCTTCCTCCCCCTT
CTCCTGGTGCTTCTCTCCTATGCCCACATCTTGACCTCGGTGCTTCGCATTAACTCCCAA
GAAGGACGCTCCAAAGCCTTCTCCACCTGCAGCTCCCATCTCCCGGTAGTGGGCACCTAC
TACTCATCCATTGCCATAGCCTATGTGGCCTACAGCGCTGACCTGCCCCTCGACTTCCAC
GTCATGGGCAATGTTGTACATGTCTTCTTCTTCCTCTTCTTCTTCTTCTT
Conceptual translation FLIYPLILVGNDQILVVVMAEASLHKPVYFFLINLSALDILSTTVTVPKTLPLFLLGDHF
LSFPACFLQMYLFHSFSCSEAFILVVMAYDRYVAICHPLQYPVLMNPQTNAVLATGAWLT
ALLLPIPAVVQTSQMAFDSIADIYHCFCDHLAVVQASCSDT/PQTFMGFCIAMVVSFLP
LLLVLLSYAHILTSVLRINSQEGRSKAFSTCSSHLPVVGTYYSSIAIAYVAYSADLPLDF
HVMGNVVH/LLLPLLLLL

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
11 74,842,164 74,842,163 Ins(3) -/AGA rs58679683 (DbSNP)
11 74,842,437 74,842,437 SNP A/G rs11236344 (DbSNP)
11 74,842,836 74,842,836 SNP A/G rs12279394 (DbSNP)
11 74,842,779 74,842,779 SNP A/G rs2712794 (DbSNP)
11 74,842,207 74,842,207 SNP A/G rs2712792 (DbSNP)
11 74,842,627 74,842,627 SNP C/T rs4245441 (DbSNP)
11 74,842,530 74,842,530 SNP C/T rs2712793 (DbSNP)
11 74,842,197 74,842,197 SNP T/C rs2851097 (DbSNP)
11 74,842,617 74,842,617 SNP T/G rs2851096 (DbSNP)
11 75,131,152 75,131,152 SNP C/T 1000GP (CEU, CHBJPT)
11 75,131,162 75,131,162 SNP G/A 1000GP (CEU, CHBJPT)
11 75,131,572 75,131,572 SNP T/G 1000GP (CEU, CHBJPT)
11 75,131,582 75,131,582 SNP T/C 1000GP (CEU, CHBJPT)
11 75,131,734 75,131,734 SNP A/G 1000GP (CEU, CHBJPT)
11 75,131,791 75,131,791 SNP A/G 1000GP (CEU)
11 75,131,803 75,131,803 SNP G/C 1000GP (CEU)
11 75,131,485 75,131,485 SNP T/C 1000GP (CHBJPT)
11 100 -100 SNP C/T 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI)

Variations - CNVs

Chr Start End Type Sources
CopyNumber 213 (Hasin)
11 74,840,148 74,843,017 Deletion #276 (Waszak)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.