OR2B8P Olfactory Receptor
| Gene Symbol | OR2B8P1 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | B |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR6-10, hs6M1-29P, dJ313I6.4, HsOR6.2.7P |
| External Ids | HGNC: 13968 GeneBank: AB065681, BK004815, NG_003194 |
| Build #39 labels | OR2B8 |
| Chromosomal location | 6:28,053,231-28,054,180 (-) |
| Cluster | 6@28a |
| Synteny | CLIC#12 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2B7P | 61.41% | 311 |
| OR2G3 | 63.46% | 301 |
| OR2W6P | 62.54% | 307 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR2B8 | 82% | 312 |
| Mouse | Or2y1c | 64% | 310 |
| Rat | Or2y1 | 65% | 308 |
| Cow | OR2B8M | 79% | 317 |
| Orang | OR2Y1P | 63% | 312 |
| Horse | OR2B8 | 85% | 317 |
| Horse | OR2B8D | 84% | 313 |
| Horse | OR2B8B | 83% | 313 |
| Chimp | OR2Y1 | 64% | 311 |
Sequence information
| Nucleotide sequence |
ATGTGCTAACAAAGAATGGATCAGAAAAATGGAAGTTCTTTCACTGGATTTATCCTACTG GGTTTCTCTGACAGGCCTCAGCTGGAGCTAGTCCTCTTTGTGGTTTTTTGATCTTCTATA TCTTCACTTTGCTGGGGAACAAAACCATCATTGTATTATCTCACTTGGACCCACATCTTC ACAATCCTATGTATTTTTTCTTCTCCAACCTAAGCTTTTTGGATCTGTGTTACACAACCG GCATTGTTCCACAGCTCCTGGTTAATCTCAGGGGAGCAGACAAATCAATCTCCTATGGTG GTTGTGTAGTTCAGCTGTACATCTCTCTAGGCTTGGGATCTACAGAATGCGTTCTCTTAG GAGTGATGGCATTTGACCGCTATGCAGCTGTTTGCAGGCCCCTCCACTACACAGTAGTCA TGCACCCTTGTCTGTATGTGCTGATGGCTTCTACTTCATGGGTCATTGGTTTTGCCAACT CCCTATTGCAGACGGTGCTCATCTTGCTTTTAACACTTTGTGGAAGAAATAAATTAGAAC ACTTTCTTTGTGAGGTTCCTCCATTGCTCAAGCTTGCCTGTGTTGACACTACTATGAATG AATCTGAACTCTTCTTTGTCAGTGTCATTATTCTTCTTGTACCTGTTGCATTAATCATAT TCTCCTATAGTCAGATTGTCAGGGCAGTCGTGAGGATAAAGTCAGCAACAGGGCAGAGAA AAGTGTTTGGGACATGTGGCTCCCACCTCACAGTGGTTTCCCTGTTCTACGGCACAGCTA TCTATGCTTACCTCCAGCCCGGCAACAACTACTCTCAGGATCAGGGCAAGTTCATCTCTC TCTTCTACACCATCATTACACCCATGATCAACCCCCTCATATATACACTGAGGAACAAGG ATGTGAAAGGAGCACTTAAGAAGGTGCTCTGGAAGAACTACGACTCCAGA |
| Conceptual translation |
MCXRMDQKNGSSFTGFILLGFSDRPQLELVLFV/FLIFYIFTLLGNKTIIVLSHLDPH LHNPMYFFFSNLSFLDLCYTTGIVPQLLVNLRGADKSISYGGCVVQLYISLGLGSTECVL LGVMAFDRYAAVCRPLHYTVVMHPCLYVLMASTSWVIGFANSLLQTVLILLLTLCGRNKL EHFLCEVPPLLKLACVDTTMNESELFFVSVIILLVPVALIIFSYSQIVRAVVRIKSATGQ RKVFGTCGSHLTVVSLFYGTAIYAYLQPGNNYSQDQGKFISLFYTIITPMINPLIYTLRN KDVKGALKKVLWKNYDSR Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 6 | 28,021,854 | 28,021,853 | Ins(1) | -/G | rs35155115 (DbSNP) | |
| 6 | 28,021,855 | 28,021,854 | Ins(1) | -/G | rs67047506 (DbSNP) | |
| 6 | 28,021,256 | 28,021,256 | SNP | A/G | rs203886 (DbSNP) | |
| 6 | 28,021,589 | 28,021,589 | SNP | A/G | rs203888 (DbSNP) | |
| 6 | 28,021,768 | 28,021,768 | SNP | C/T | rs9468270 (DbSNP) | |
| 6 | 28,021,269 | 28,021,269 | SNP | C/T | rs203887 (DbSNP) | |
| 6 | 28,021,775 | 28,021,775 | SNP | G/T | rs203889 (DbSNP) | |
| 6 | 28,053,482 | 28,053,482 | SNP | T/A | 1000GP (CEU) | |
| 6 | 28,053,491 | 28,053,491 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 6 | 28,053,811 | 28,053,811 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 6 | 28,053,990 | 28,053,990 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 6 | 28,053,997 | 28,053,997 | SNP | T/G | 1000GP (CEU, CHBJPT) | |
| 6 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 6 | 28,020,282 | 28,022,144 | CopyNumber | Variation_93574 (DGV) |
| 6 | 28,020,966 | 28,021,156 | InDel | Variation_93575 (DGV) |
| 6 | 28,019,009 | 28,022,058 | Deletion | #284 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.