OR2BH1P Olfactory Receptor
| Gene Symbol | OR2BH1P1 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | BH |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | |
| External Ids | HGNC: 31250 GeneBank: NG_004410 |
| Build #39 labels | 171 |
| Chromosomal location | 11:28,986,635-28,987,498 (+) |
| Cluster | 11@29 |
| Synteny | CLIC#0 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2F1 | 33.92% | 283 |
| OR2F2 | 31.58% | 285 |
| OR2M2 | 30.5% | 282 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Cow | OR2AV1 | 40% | 277 |
| Horse | OR2AV13P | 41% | 284 |
Sequence information
| Nucleotide sequence |
ATGTTTTCTCTCTCAATTTTACAACTTCCTTAGATGTACACTGTGGCCCTCTCAGGGACA TCTATTCTGATTTTCTTGATTTAGACAGATTTCTGAGTTCACACATCATTGTACTCTTTC TGAGTTCTCATTGATATAGCCATTTCTGTTGTTAAAATTGGTATTGAGGTTTTCTCTGGA AAGATAAACTTCTCACATACTGGTTGTGGAACTCAGATTTTCTTCTTTCTGACTGCTGGC ATTTTCAAATATGTCCTTCTCACTTATATGGCTTATGACCATAACGTGGCTATCTGTGCC TGAGTGACCAACCTTCATGAGTGATCAGGTCTTCTAGCAATGGGCAGTAGAGTCTTGGAT TGGAGGAAAACTTTCTTCTTTGGCTCATACCATTTATATTTTTCATTTATTCAGCTATAA AGCAAAGGAGATTAGCCACTTATGGCCCAAGCTCTTTTAAAGCTCCTCTGTGGGGATCCC CTATATACAAAATGATGTTTTTTTCACAATAATTACATTCTTGTTCACCCTGCTTCCTCT TACTCTGACCTTATCCTCCAAGCTTATTGTGTTCACTATCCTACACATGAACTCCTCAAA TGGGGGAGCAAAGTCTTGGCCACATACTGCTTTCATCTGAGTGTGCTGATTCCCTGCTGT GGCCAGGCCACTTCGTCTACATGACTTCCAGCTCCTTCTGAACTGTAAACAAATACCAGA CCATGTCTGCTTGACAGCATAATTATATCCACGTTGAAACCCCTGATAGACATTCTGAAG AATGCAGAAGTGGCAGGAGCTTGGAGCAAGTTCTTGTAAAAGAAAGCGCTAAAAAGTCAA CACCTTATTATCGTAGCTGTGAAA |
| Conceptual translation |
MFSLSILQLPXYTVALSGTSILIFLIXDFXHTSLYSFXLIDIAISVVKIGIEVFSG KINFSHTGCGTQIFFFLTAGIFKYVLLTYMAYDHNVAICAXTNL\SDQVFXWAVESW IGGKLSSLAHTIYIFHLFSYKAKEISHLWPKLFXSSVGIPYIQNDVFFTIITFLFTLLP LTLTLSSKLIVFTILHMNSSNGGAKSW/TYCFHLSVLIPCCGQA/FVYMTSSSFXVN KYQTMS/LTAXYP/LKPLIDILKNAEVAGAWSKFLXKALKSQHLIIVAVK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 29,008,968 | 29,008,968 | SNP | C/G | rs72638132 (DbSNP) | |
| 11 | 28,987,030 | 28,987,030 | SNP | A/G | 1000GP (CHBJPT) | |
| 11 | 28,987,421 | 28,987,421 | SNP | G/C | 1000GP (CHBJPT) | |
| 11 | 100 | -100 | SNP | G/C | 1000GP (YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 28,924,493 | 29,072,498 | CopyNumber | Variation_3841 (DGV) |
| 11 | 29,006,460 | 29,013,278 | CopyNumber | Variation_22697 (DGV) |
| 11 | 29,006,385 | 29,013,797 | CopyNumber | Variation_23137 (DGV) |
| 11 | 28,987,325 | 29,017,486 | CopyNumber | Variation_34956 (DGV) |
| 11 | 28,989,481 | 29,022,755 | CopyNumber | Variation_34957 (DGV) |
| 11 | 29,007,201 | 29,012,896 | CopyNumber | Variation_43818 (DGV) |
| 11 | 29,006,531 | 29,012,746 | CopyNumber | Variation_58509 (DGV) |
| 11 | 29,007,041 | 29,013,038 | CopyNumber | Variation_61114 (DGV) |
| 11 | 29,007,150 | 29,012,726 | CopyNumber | Variation_65906 (DGV) |
| 11 | 29,007,208 | 29,012,280 | CopyNumber | Variation_75586 (DGV), Variation_85704 (DGV) |
| 11 | 29,006,448 | 29,013,344 | CopyNumber | Variation_101171 (DGV) |
| Deletion | 250 (Hasin) | |||
| 11 | 29,008,082 | 29,011,045 | Deletion | #7 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.