OR2G2 Olfactory Receptor
| Gene Symbol | OR2G21 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | G |
| Pseudogene | No |
| CORP pseudogene probability score | 1 (pseudogene) |
| Aliases | OR1-32, HsOR1.5.4, ORL3042, ORL3054 |
| External Ids | HGNC: 15007 GeneBank: AB065621, BK004472, NM_001001915 ORDB: ORL3042, ORL3054 |
| Build #39 labels | OR2G2 |
| Chromosomal location | 1:247,588,360-247,589,310 (+) |
| Cluster | 1@248 |
| Synteny | CLIC#5 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2B8P | 61.72% | 303 |
| OR2G3 | 62.95% | 305 |
| OR2W6P | 59.93% | 307 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR2G6 | 65% | 307 |
| Mouse | Or2w3 | 61% | 302 |
| Rat | Or2w6 | 61% | 307 |
| Cow | OR2G28 | 82% | 310 |
| Orang | OR2G6 | 67% | 311 |
| Horse | OR2G28 | 83% | 313 |
| Horse | OR2G29 | 82% | 306 |
| Chimp | OR2G6P | 65% | 305 |
Expression evidences
| Source | Accession |
|---|---|
| GNF Atlas2 | gnf1h11292_at |
Sequence information
| Nucleotide sequence |
ATGGGGATGGTGAGACATACCAATGAGAGCAACCTAGCAGGTTTCATCCTTTTAGGGTTT TCTGATTATCCTCAGTTACAGAAGGTTCTATTTGTGCTCATATTGATTCTGTATTTACTA ACTATTTTGGGGAATACCACCATCATTCTGGTTTCTCGTCTGGAACCCAAGCTTCATATG CCGATGTATTTCTTCCTTTCTCATCTCTCCTTCCTGTACCGCTGCTTCACCAGCAGTGTT ATTCCCCAGCTCCTGGTAAACCTGTGGGAACCCATGAAAACTATCGCCTATGGTGGCTGT TTGGTTCACCTTTACAACTCCCATGCCCTGGGATCCACTGAGTGCGTCCTCCCGGCTGTG ATGTCCTGTGACCGCTATGTGGCTGTCTGCCGTCCTCTCCATTACACTGTCTTAATGCAT ATCCATCTCTGCATGGCCTTGGCATCTATGGCATGGCTCAGTGGAATAGCCACCACCCTG GTACAGTCCACCCTCACCCTGCAGCTGCCCTTCTGTGGGCATCGCCAAGTGGATCATTTC ATCTGCGAGGTCCCTGTGCTCATCAAGCTGGCTTGTGTGGGCACCACGTTTAACGAGGCT GAGCTTTTTGTGGCTAGTATCCTTTTCCTTATAGTGCCTGTCTCATTCATCCTGGTCTCC TCTGGCTACATTGCCCACGCAGTGTTGAGGATTAAGTCAGCTACCAGGAGACAGAAAGCA TTCGGGACCTGCTTCTCCCACCTGACAGTGGTCACCATCTTTTATGGAACCATCATCTTC ATGTATCTGCAGCCAGCCAAGAGTAGATCCAGGGACCAGGGCAAGTTTGTTTCTCTCTTC TACACTGTGGTAACCCGCATGCTTAACCCTCTTATTTATACCTTGAGGATCAAGGAGGTG AAAGGGGCATTAAAGAAAGTTCTAGCAAAGGCTCTGGGAGTAAATATTTTA |
| Conceptual translation |
MVRHTNESNLAGFILLGFSDYPQLQKVLFVLILILYLLTILGNTTIILVSRLEPKLHMPM YFFLSHLSFLYRCFTSSVIPQLLVNLWEPMKTIAYGGCLVHLYNSHALGSTECVLPAVMS CDRYVAVCRPLHYTVLMHIHLCMALASMAWLSGIATTLVQSTLTLQLPFCGHRQVDHFIC EVPVLIKLACVGTTFNEAELFVASILFLIVPVSFILVSSGYIAHAVLRIKSATRRQKAFG TCFSHLTVVTIFYGTIIFMYLQPAKSRSRDQGKFVSLFYTVVTRMLNPLIYTLRIKEVKG ALKKVLAKALGVNIL Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 1 | 100 | -100 | NS | C/G | P/A | 1000GP (YRI, YRI, YRI, YRI, YRI) |
| 1 | 247,588,429 | 247,588,429 | NS | C/G | P/A | 1000GP (CEU) |
| 1 | 247,588,662 | 247,588,662 | NS | G/T | L/F | 1000GP (CHBJPT) |
| 1 | 247,588,717 | 247,588,717 | NS | G/C | V/L | 1000GP (CEU, CHBJPT) |
| 1 | 247,588,807 | 247,588,807 | NS | A/G | M/V | 1000GP (CEU) |
| 1 | 247,588,859 | 247,588,859 | NS | T/C | L/P | 1000GP (CEU, CHBJPT) |
| 1 | 247,589,065 | 247,589,065 | NS | A/G | R/G | 1000GP (CEU, CHBJPT) |
| 1 | 247,751,731 | 247,751,731 | NS | C/G | P/A | rs12737801 (DbSNP) |
| 1 | 247,752,019 | 247,752,019 | NS | C/G | L/V | rs1151687 (DbSNP) |
| 1 | 247,752,109 | 247,752,109 | NS | A/G | M/V | rs61732336 (DbSNP) |
| 1 | 247,752,161 | 247,752,161 | NS | C/T | P/L | rs10925085 (DbSNP) |
| 1 | 247,752,254 | 247,752,254 | NS | A/C | N/T | rs61735740 (DbSNP) |
| 1 | 247,752,367 | 247,752,367 | NS | A/G | R/G | rs869111 (DbSNP) |
| 1 | 247,752,518 | 247,752,518 | NS | A/G | H/R | rs74152638 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 1 | 247,074,430 | 248,328,835 | CopyNumber | Variation_6816 (DGV) |
| 1 | 247,714,585 | 248,277,146 | CopyNumber | Variation_3339 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| P24A | R74G | V120L | M150V | L167P | R236G | G242E | R286H | % Freq | CORP | |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | P | R | L | M | L | R | G | R | 24.81 | 1.000 |
| 2 | P | R | L | M | P | G | G | R | 21.74 | 1.000 |
| 3 | P | R | V | M | L | R | G | R | 16.74 | 1.000 |
| 4 | P | R | V | M | P | R | G | R | 7.22 | 1.000 |
| 5 | P | R | V | M | L | G | G | R | 6.53 | 1.000 |
| 6 | A | R | L | M | L | G | G | R | 5.84 | 1.000 |
| 7 | P | R | V | V | L | G | G | R | 3.76 | 1.000 |
| 8 | P | R | V | M | P | G | G | R | 2.69 | 1.000 |
| 9 | P | R | L | M | L | G | G | R | 1.61 | 1.000 |
| 10 | A | R | V | M | L | R | G | R | 1.38 | 1.000 |
| 11 | P | R | V | V | L | R | G | R | 1.31 | 1.000 |
| 12 | P | R | V | M | L | R | E | R | 1.31 | 1.000 |
| 13 | P | R | L | V | L | R | G | R | 1.23 | 1.000 |
| 14 | P | R | L | M | P | R | G | R | 0.92 | 1.000 |
| 15 | P | G | L | M | L | R | G | R | 0.84 | 1.000 |
| 16 | P | R | V | M | L | R | G | H | 0.61 | 1.000 |
| 17 | P | R | L | V | L | G | G | R | 0.31 | 1.000 |
| 18 | A | R | V | M | P | R | G | R | 0.23 | 1.000 |
| 19 | P | R | V | V | P | R | G | R | 0.23 | 1.000 |
| 20 | A | R | L | M | L | R | G | R | 0.15 | 1.000 |
| 21 | A | R | L | M | P | G | G | R | 0.15 | 1.000 |
| 22 | A | R | L | M | P | R | G | R | 0.08 | 1.000 |
| 23 | P | R | L | V | P | R | G | R | 0.08 | 1.000 |
| 24 | A | R | V | M | L | G | G | R | 0.08 | 1.000 |
| 25 | P | R | V | M | L | G | G | H | 0.08 | 1.000 |
| 26 | P | R | V | V | P | G | G | R | 0.08 | 1.000 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR2G2.aApr07-unspliced | main_exon | CDS | chr1 | 247,588,360 | 247,589,310 | + |
| 3UTR | chr1 | 247,589,310 | 247,589,313 | + | ||