OR2H5P Olfactory Receptor
| Gene Symbol | OR2H5P1 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | H |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR6-35, hs6M1-13, HS271M21, OST616, OLFR24B, OR6-33, OLFR42B, HsOR6.3.25P, ORL3155 |
| External Ids | HGNC: 8256 GeneBank: AB065470, AF042075, AF042076, BK004545, BK004662, NG_002319 ORDB: ORL3155 |
| Build #39 labels | OR2H5P |
| Chromosomal location | 6:29,573,897-29,574,833 (+) |
| Cluster | 6@29 |
| Synteny | CLIC#12 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2H2 | 88.78% | 312 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR2H9P | 70% | 309 |
| Mouse | Or2h2 | 83% | 307 |
| Rat | Or2h2 | 83% | 307 |
| Cow | OR2H1D | 79% | 312 |
| Orang | OR2H2P | 89% | 312 |
| Horse | OR2H1 | 82% | 306 |
| Chimp | OR2H2P | 77% | 359 |
| Chimp | OR2H1 | 80% | 306 |
Sequence information
| Nucleotide sequence |
GAGGAACAGGCCATGGTTAACCAAAGCTCCGCACCAGGCTTTCTCCTTCTGGGCTTCTCT GAACACCCAGCACTGGAAAGGACTCTCTTTGTAGTTGTCTTCACTTCCTACCTCCTAACC CCGGTGGACTCATCATCCTGCTGTCTGTGCTGGACCCCAGGCTCCACTCTCCAATGTACT TTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGTTTCACCATAAGTTGTGTCCCCGGGA TGCTGGTCAACCTCTGGGAGCCAAAGAAGACCATCATCTTACTGGGCTGCTCTGTCCAGT TCTTCATCTTCCTGTCCCTGGGGACCACTGAGTGCATCCTCCTGACGGTGATGGCCTTTG ACCGCTACATGGCTATCTTCAAGCCCCTGCGCCATGCCACCATCGTCCACCTCTGCCTGT GCTGGCAGCTGGCATCTGTGGCCTGGGTCATTGGGCTGGTAGAGTCAGTGGTCCAGACAC CATCCACCCTGCGCCTGCCTTTCTGCCCCCATCAGCAGGTGGATGATTTTGTCTGTGAGG TCCCAGCTCTAATTCGACTCTCCTGTGAAGACACCTCCTACAATGAGATCCAGATGGCTG TTGCCAGTGTCTTCATCTTGGCTGTGCCTCAGCCTCATCCTTGTCTCTTATGGAGCCATT GCCTGGGCAGTGCTAAGGACTAACTGCAAAAGGGCAGAGGAAAGCTTTTGGGACCTGCTC CTCCCATCTCACTGTGGTCACCCTCTTCTACAGCTCAGTCATTGCTGTCTACCTCCAGCC CAAAAATCCCTATGCCCAAGAGAGGGGCAAGTTCTTTGGTCTCTTCTATGCAGTGGGCAC TCCTTCACTTAACCCTCTCATATACACCCTGAGGAACAAGGAGGTAACCAGGGCATTCAG GAGATTGCTGGCGAAGGAAATGGGGCTCATACAAAGT |
| Conceptual translation |
EEQAMVNQSSAPGFLLLGFSEHPALERTLFVVVFTSYLLT/GGLIILLSVLDPRLHSPM YFFLSNLSFLDLCFTISCVPGMLVNLWEPKKTIILLGCSVQFFIFLSLGTTECILLTVMA FDRYMAIFKPLRHATIVHLCLCWQLASVAWVIGLVESVVQTPSTLRLPFCPHQQVDDFVC EVPALIRLSCEDTSYNEIQMAVASVFILAVP\LILVSYGAIAWAVLR\TAKGQRKAFG TCSSHLTVVTLFYSSVIAVYLQPKNPYAQERGKFFGLFYAVGTPSLNPLIYTLRNKEVTR AFRRLLAKEMGLIQS Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 6 | 29,542,220 | 29,542,220 | SNP | A/C | rs28359959 (DbSNP) | |
| 6 | 29,542,604 | 29,542,604 | SNP | A/G | rs13190685 (DbSNP) | |
| 6 | 29,542,064 | 29,542,064 | SNP | A/G | rs72507815 (DbSNP) | |
| 6 | 29,542,544 | 29,542,544 | SNP | C/G | rs13190969 (DbSNP) | |
| 6 | 29,542,601 | 29,542,601 | SNP | C/G | rs13190791 (DbSNP) | |
| 6 | 29,542,543 | 29,542,543 | SNP | C/T | rs13206667 (DbSNP) | |
| 6 | 29,542,445 | 29,542,445 | SNP | T/C | rs1233398 (DbSNP) | |
| 6 | 29,574,287 | 29,574,287 | SNP | G/A | 1000GP (CHBJPT) | |
| 6 | 29,574,518 | 29,574,518 | SNP | C/T | 1000GP (CHBJPT) | |
| 6 | 100 | -100 | SNP | G/A | 1000GP (YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 6 | 29,469,101 | 29,678,670 | CopyNumber | Variation_3598 (DGV) |
| 6 | 29,527,407 | 29,566,446 | CopyNumber | Variation_36504 (DGV) |
| 6 | 29,541,574 | 29,544,610 | CopyNumber | #41 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.