OR2I1P Olfactory Receptor
| Gene Symbol | OR2I1P1 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | I |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR6-1, OR6-34, hs6M1-14, AC004179-A, dJ271M21.7, HsOR6.3.24P, ORL509 |
| External Ids | HGNC: 8258 GeneBank: AB065686, BK004540, BK004661, HSA322890, HSA332220, HSA335323, HSA340484, HSA340489, NG_004688, XM_498081 ORDB: ORL509 |
| Build #39 labels | OR2I1P, OR2I3P, OR2I4P, OR2I2 |
| Chromosomal location | 6:29,553,189-29,554,160 (+) |
| Cluster | 6@29 |
| Synteny | CLIC#12 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2B8P | 51.99% | 302 |
| OR2G3 | 53.62% | 304 |
| OR2Y1 | 57.28% | 302 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR2C1 | 53% | 312 |
| Mouse | Or2i1 | 83% | 308 |
| Rat | Or2y1 | 58% | 308 |
| Cow | OR2Y1 | 55% | 309 |
| Orang | OR2Y1P | 56% | 309 |
| Horse | OR2B8C | 55% | 302 |
| Chimp | OR2Y1 | 57% | 309 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | T79326 |
| GNF Atlas2 | gnf1h09654_at |
Sequence information
| Nucleotide sequence |
GACCTTCCAAACATTCTGGGAGTTTTCCTCCTTTAGGCCAACTACAGCGCAGAGGAGCGC TTTCTCCTGCTGGGTTTCTCCGACTGGCCTTCCCTGCAGCCGGTCCTCTTCGCCCTTGTC CTCCTGTGCTACCTCCTGACCTTGACGGGCAACTCGGCGCTGGTGCTGCTGGCGGTGCGC GACCCGCGCCTGCACACGCCCATGTACTACTTCCTCTGCCACCTGGCCTTGGTAGACGCG GGCTTCACTACTAGCGTGGTGCCGCCGCTGCTGGCCAACCTGCGCGGACCAGCGCTCTGG CTGCCGCGCAGCCACTGCACGGCCCAGCTGTGCGCATCGCTGGCTCTGGGTTCCGCCGAA TGCGTCCTCCTGGCGGTGATGGCTCTGGACCGCGCGGCCGCAGTGTGCCGCCCGCTGCGC TATGCGGGGCTCGTCTCCCCGCGCCTATGTCGCACGCTGGCCAGCGCCTCCTGGCTAAGT GGCCTCACCAACTCGGTTGCGCAAACCGCGCTCCTGGCTGAGCGGCCGCTGTGCGCGCCC CGCCTGCTGGACCACTTCATCTGTGAGCTGCCGGCGTTGCTCAAGCTGGCCTGCGGAGGC GACGGAGACACTACCGAGAACCAGATGTTCGCCGCCCGCGTGGTCATCCTGCTGCTGCCG TTTGCCGTCATCCTGGCCTCCTACGGTGCCGTGGCCCGAGCTGTCTGTTGCATGCGGTTC AGCGGAGGCCGGAGGAGGGCGGTGGGCACGTGTGGGTCCCACCTGACAGCCGTCTGCCTG TTCTACGGCTCGGCCATCTACACCTACCTGCAGCCCGCGCAGCGCTACAACCAGGCACGG GGCAAGTTCGTATCGCTCTTCTACACCGTGGTCACACCTGCTCTCAACCCGCTCATCTAC ACCCTCAGGAATAAGAAAGTGAAGGGGGCAGCGAGGAGGCTGCTGCGGAGTCTGGGGAGA GGCCAGGCTGGG |
| Conceptual translation |
DLPNILGVFLLXNYSAEERFLLLGFSDWPSLQPVLFALVLLCYLLTLTGNSALVLLAVR DPRLHTPMYYFLCHLALVDAGFTTSVVPPLLANLRGPALWLPRSHCTAQLCASLALGSAE CVLLAVMALDRAAAVCRPLRYAGLVSPRLCRTLASASWLSGLTNSVAQTALLAERPLCAP RLLDHFICELPALLKLACGGDGDTTENQMFAARVVILLLPFAVILASYGAVARAVCCMRF SGGRRRAVGTCGSHLTAVCLFYGSAIYTYLQPAQRYNQARGKFVSLFYTVVTPALNPLIY TLRNKKVKGAARRLLRSLGRGQAG Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 6 | 29,521,215 | 29,521,215 | SNP | A/C | rs61730331 (DbSNP) | |
| 6 | 29,521,516 | 29,521,516 | SNP | A/G | rs16895067 (DbSNP) | |
| 6 | 29,521,663 | 29,521,663 | SNP | A/G | rs61730332 (DbSNP) | |
| 6 | 29,521,806 | 29,521,806 | SNP | A/G | rs61730333 (DbSNP) | |
| 6 | 29,521,935 | 29,521,935 | SNP | A/G | rs62406570 (DbSNP) | |
| 6 | 29,521,839 | 29,521,839 | SNP | A/T | rs61734862 (DbSNP) | |
| 6 | 29,521,285 | 29,521,285 | SNP | C/G | rs17184248 (DbSNP) | |
| 6 | 29,521,319 | 29,521,319 | SNP | C/G | rs11724 (DbSNP) | |
| 6 | 29,521,661 | 29,521,661 | SNP | C/G | rs2294747 (DbSNP) | |
| 6 | 29,521,289 | 29,521,289 | SNP | C/G | rs17184255 (DbSNP) | |
| 6 | 29,521,557 | 29,521,557 | SNP | C/T | rs16895070 (DbSNP) | |
| 6 | 29,521,125 | 29,521,125 | SNP | C/T | rs16895058 (DbSNP) | |
| 6 | 29,521,260 | 29,521,260 | SNP | C/T | rs28986289 (DbSNP) | |
| 6 | 29,521,676 | 29,521,676 | SNP | T/C | rs2294746 (DbSNP) | |
| 6 | 29,521,445 | 29,521,445 | SNP | T/C | rs389419 (DbSNP) | |
| 6 | 29,553,542 | 29,553,542 | SNP | C/G | 1000GP (CEU, CHBJPT) | |
| 6 | 29,553,668 | 29,553,668 | SNP | C/T | 1000GP (CEU) | |
| 6 | 29,553,348 | 29,553,348 | SNP | C/T | 1000GP (CHBJPT) | |
| 6 | 29,553,512 | 29,553,512 | SNP | C/G | 1000GP (CHBJPT) | |
| 6 | 29,553,739 | 29,553,739 | SNP | A/G | 1000GP (CHBJPT) | |
| 6 | 29,553,780 | 29,553,780 | SNP | T/C | 1000GP (CHBJPT) | |
| 6 | 29,553,899 | 29,553,899 | SNP | C/T | 1000GP (CHBJPT) | |
| 6 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 6 | 29,469,101 | 29,678,670 | CopyNumber | Variation_3598 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.