OR2I1P Olfactory Receptor
Gene Symbol | OR2I1P1 (View this gene in GeneCards) |
Family | 2 |
Subfamily | I |
Pseudogene | Yes |
CORP pseudogene probability score | |
Aliases | OR6-1, OR6-34, hs6M1-14, AC004179-A, dJ271M21.7, HsOR6.3.24P, ORL509 |
External Ids | HGNC: 8258 GeneBank: AB065686, BK004540, BK004661, HSA322890, HSA332220, HSA335323, HSA340484, HSA340489, NG_004688, XM_498081 ORDB: ORL509 |
Build #39 labels | OR2I1P, OR2I3P, OR2I4P, OR2I2 |
Chromosomal location | 6:29,553,189-29,554,160 (+) |
Cluster | 6@29 |
Synteny | CLIC#12 |
Remarks |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR2B8P | 51.99% | 302 |
OR2G3 | 53.62% | 304 |
OR2Y1 | 57.28% | 302 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR2C1 | 53% | 312 |
Mouse | Or2i1 | 83% | 308 |
Rat | Or2y1 | 58% | 308 |
Cow | OR2Y1 | 55% | 309 |
Orang | OR2Y1P | 56% | 309 |
Horse | OR2B8C | 55% | 302 |
Chimp | OR2Y1 | 57% | 309 |
Expression evidences
Source | Accession |
---|---|
ESTs | T79326 |
GNF Atlas2 | gnf1h09654_at |
Sequence information
Nucleotide sequence |
GACCTTCCAAACATTCTGGGAGTTTTCCTCCTTTAGGCCAACTACAGCGCAGAGGAGCGC TTTCTCCTGCTGGGTTTCTCCGACTGGCCTTCCCTGCAGCCGGTCCTCTTCGCCCTTGTC CTCCTGTGCTACCTCCTGACCTTGACGGGCAACTCGGCGCTGGTGCTGCTGGCGGTGCGC GACCCGCGCCTGCACACGCCCATGTACTACTTCCTCTGCCACCTGGCCTTGGTAGACGCG GGCTTCACTACTAGCGTGGTGCCGCCGCTGCTGGCCAACCTGCGCGGACCAGCGCTCTGG CTGCCGCGCAGCCACTGCACGGCCCAGCTGTGCGCATCGCTGGCTCTGGGTTCCGCCGAA TGCGTCCTCCTGGCGGTGATGGCTCTGGACCGCGCGGCCGCAGTGTGCCGCCCGCTGCGC TATGCGGGGCTCGTCTCCCCGCGCCTATGTCGCACGCTGGCCAGCGCCTCCTGGCTAAGT GGCCTCACCAACTCGGTTGCGCAAACCGCGCTCCTGGCTGAGCGGCCGCTGTGCGCGCCC CGCCTGCTGGACCACTTCATCTGTGAGCTGCCGGCGTTGCTCAAGCTGGCCTGCGGAGGC GACGGAGACACTACCGAGAACCAGATGTTCGCCGCCCGCGTGGTCATCCTGCTGCTGCCG TTTGCCGTCATCCTGGCCTCCTACGGTGCCGTGGCCCGAGCTGTCTGTTGCATGCGGTTC AGCGGAGGCCGGAGGAGGGCGGTGGGCACGTGTGGGTCCCACCTGACAGCCGTCTGCCTG TTCTACGGCTCGGCCATCTACACCTACCTGCAGCCCGCGCAGCGCTACAACCAGGCACGG GGCAAGTTCGTATCGCTCTTCTACACCGTGGTCACACCTGCTCTCAACCCGCTCATCTAC ACCCTCAGGAATAAGAAAGTGAAGGGGGCAGCGAGGAGGCTGCTGCGGAGTCTGGGGAGA GGCCAGGCTGGG |
Conceptual translation |
DLPNILGVFLLXNYSAEERFLLLGFSDWPSLQPVLFALVLLCYLLTLTGNSALVLLAVR DPRLHTPMYYFLCHLALVDAGFTTSVVPPLLANLRGPALWLPRSHCTAQLCASLALGSAE CVLLAVMALDRAAAVCRPLRYAGLVSPRLCRTLASASWLSGLTNSVAQTALLAERPLCAP RLLDHFICELPALLKLACGGDGDTTENQMFAARVVILLLPFAVILASYGAVARAVCCMRF SGGRRRAVGTCGSHLTAVCLFYGSAIYTYLQPAQRYNQARGKFVSLFYTVVTPALNPLIY TLRNKKVKGAARRLLRSLGRGQAG Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
6 | 29,521,215 | 29,521,215 | SNP | A/C | rs61730331 (DbSNP) | |
6 | 29,521,516 | 29,521,516 | SNP | A/G | rs16895067 (DbSNP) | |
6 | 29,521,663 | 29,521,663 | SNP | A/G | rs61730332 (DbSNP) | |
6 | 29,521,806 | 29,521,806 | SNP | A/G | rs61730333 (DbSNP) | |
6 | 29,521,935 | 29,521,935 | SNP | A/G | rs62406570 (DbSNP) | |
6 | 29,521,839 | 29,521,839 | SNP | A/T | rs61734862 (DbSNP) | |
6 | 29,521,285 | 29,521,285 | SNP | C/G | rs17184248 (DbSNP) | |
6 | 29,521,319 | 29,521,319 | SNP | C/G | rs11724 (DbSNP) | |
6 | 29,521,661 | 29,521,661 | SNP | C/G | rs2294747 (DbSNP) | |
6 | 29,521,289 | 29,521,289 | SNP | C/G | rs17184255 (DbSNP) | |
6 | 29,521,557 | 29,521,557 | SNP | C/T | rs16895070 (DbSNP) | |
6 | 29,521,125 | 29,521,125 | SNP | C/T | rs16895058 (DbSNP) | |
6 | 29,521,260 | 29,521,260 | SNP | C/T | rs28986289 (DbSNP) | |
6 | 29,521,676 | 29,521,676 | SNP | T/C | rs2294746 (DbSNP) | |
6 | 29,521,445 | 29,521,445 | SNP | T/C | rs389419 (DbSNP) | |
6 | 29,553,542 | 29,553,542 | SNP | C/G | 1000GP (CEU, CHBJPT) | |
6 | 29,553,668 | 29,553,668 | SNP | C/T | 1000GP (CEU) | |
6 | 29,553,348 | 29,553,348 | SNP | C/T | 1000GP (CHBJPT) | |
6 | 29,553,512 | 29,553,512 | SNP | C/G | 1000GP (CHBJPT) | |
6 | 29,553,739 | 29,553,739 | SNP | A/G | 1000GP (CHBJPT) | |
6 | 29,553,780 | 29,553,780 | SNP | T/C | 1000GP (CHBJPT) | |
6 | 29,553,899 | 29,553,899 | SNP | C/T | 1000GP (CHBJPT) | |
6 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
Chr | Start | End | Type | Sources |
---|---|---|---|---|
6 | 29,469,101 | 29,678,670 | CopyNumber | Variation_3598 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.