Search Olfactory receptors

(e.g. OR1G1, AF087928, Segregating Pseudo)

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OR2J1P Olfactory Receptor

Gene Symbol OR2J1P1 (View this gene in GeneCards)
Family 2
Subfamily J
Pseudogene Yes
CORP pseudogene probability score
Aliases OR6-5, hs6M1-4, OR6-15, dJ80I19.2, HsOR6.3.5P, ORL3165
External Ids HGNC: 8259   GeneBank: BK004663, HSA302559-HSA302567, HSA302569, HSA302570, NG_004683, XM_498069   ORDB: ORL3165   
Build #39 labels OR2J1P
Chromosomal location 6:29,100,949-29,101,878 (+)
Cluster 6@29
Synteny CLIC#0
Remarks Segregating Pseudo Gene, a nonsynonymous SNP rs2394517 (AA change=*/Q )

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR2J2 91.59% 309
OR2J3 89.54% 306

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR2W6 61% 303
Mouse Or2j3 82% 304
Rat Or2j3 83% 297
Cow OR2J1 87% 309
Cow OR2J3C 88% 304
Cow OR2J3 87% 304
Cow OR2J3B 86% 304
Orang OR2J1 93% 310
Horse OR2J1 89% 309
Horse OR2J1B 89% 305
Horse OR2J3 88% 304
Chimp OR2J1 98% 310

Expression evidences

Source Accession
GNF Atlas2 216818_s_at

Sequence information

Nucleotide sequence ATGAAAAAAAATGCAAGTTTTGAAGACTTCTTTATTCTACTTGGATTTTCTAACTGGCCT
CATCTGGAAGTAGTTCTCTTTGTGGTTATCTTGATCTTCTACTTGATAACACTGATAGGA
AACCTGTTCATCATCATCCTGTCATACCTGGACTCCCATCTCCACACTCCCATGTACTTC
TTCCTTTCAAATCTCTCATTTCTGGATCTCTGCTACACCACCAGCTCTATCCCTCAGTTG
CTGGTGAATCTCTGGGGCCCGGAAAAGACCATCTCTTATGCTGGTTGTACAGTTCAACTT
TACTTTGTTCTCGCACTGGGAACCGCAGAGTGTGTCCTACTGGTGGTGATGTCCTATGAT
CGTTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCACCCTCGTTTCTGC
CGCTTGTTGGCTGCGGCTTCTTGGGTAAGTGGTTTTACAACCTCAGCACTTCATTCCTCC
TTTACTTTCTGGATACCCCTATGTAGACATCGCCTAGTGGATCACTTCTTCTGTGAAGCT
CCAGCACTTCTGCGATTATCATGTGTTGATACCTAGGCAAATGAGCTGACCCTCATGGTC
ATGAGCTCCATTTTTGTTCTCATACCTCTCATCCTCATCCTCACTTCCTATGGTGCCATT
GCCCGGGCTGTACTGAGCATGCAATCAACCACTGGGCTTCAGAAAGTGCTTAGGACATGT
GGAGCCCATCTTATGGTTGTATCTCTCTTTTTCATTCCAGTCATGTGCATGTATCTCCAG
CCACCATCAGAAAATTCTCAAGATCAAGGCAAGTTCATTGCCCTCTTTTACACTGTTGTC
ACACCTAGTCTTAACCCTCTAATCTACACTTTCAGAAACAAGGATGTAAGAGGGGCAGTG
AAGAGACTAATGGGGTGGGAATGGGGGATG
Conceptual translation MKKNASFEDFFILLGFSNWPHLEVVLFVVILIFYLITLIGNLFIIILSYLDSHLHTPMYF
FLSNLSFLDLCYTTSSIPQLLVNLWGPEKTISYAGCTVQLYFVLALGTAECVLLVVMSYD
RYAAVCRPLHYTVLMHPRFCRLLAAASWVSGFTTSALHSSFTFWIPLCRHRLVDHFFCEA
PALLRLSCVDTXNELTLMVMSSIFVLIPLILILTSYGAIARAVLSMQSTTGLQKVLRTC
GAHLMVVSLFFIPVMCMYLQPPSENSQDQGKFIALFYTVVTPSLNPLIYTFRNKDVRGAV
KRLMGWEWGM

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
6 29,069,299 29,069,299 rescued_nonsense C/T rs2394517 (DbSNP)
6 29,068,759 29,068,759 SNP A/C rs3131087 (DbSNP)
6 29,069,016 29,069,016 SNP A/G rs3131088 (DbSNP)
6 29,069,337 29,069,337 SNP A/T rs2394518 (DbSNP)
6 29,069,361 29,069,361 SNP C/G rs72500873 (DbSNP)
6 29,069,264 29,069,264 SNP C/T rs2394516 (DbSNP)
6 29,069,371 29,069,371 SNP T/C rs72500874 (DbSNP)
6 29,100,982 29,100,982 SNP C/A 1000GP (CEU, CHBJPT)
6 29,101,239 29,101,239 SNP G/A 1000GP (CEU, CHBJPT)
6 29,101,487 29,101,487 SNP T/C 1000GP (CEU, CHBJPT)
6 29,101,522 29,101,522 SNP C/T 1000GP (CEU, CHBJPT)
6 29,101,560 29,101,560 SNP A/T 1000GP (CEU, CHBJPT)
6 100 -100 SNP C/A 1000GP (YRI, YRI, YRI, YRI)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.