OR2J1P Olfactory Receptor
| Gene Symbol | OR2J1P1 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | J |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR6-5, hs6M1-4, OR6-15, dJ80I19.2, HsOR6.3.5P, ORL3165 |
| External Ids | HGNC: 8259 GeneBank: BK004663, HSA302559-HSA302567, HSA302569, HSA302570, NG_004683, XM_498069 ORDB: ORL3165 |
| Build #39 labels | OR2J1P |
| Chromosomal location | 6:29,100,949-29,101,878 (+) |
| Cluster | 6@29 |
| Synteny | CLIC#0 |
| Remarks | Segregating Pseudo Gene, a nonsynonymous SNP rs2394517 (AA change=*/Q ) |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2J2 | 91.59% | 309 |
| OR2J3 | 89.54% | 306 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR2W6 | 61% | 303 |
| Mouse | Or2j3 | 82% | 304 |
| Rat | Or2j3 | 83% | 297 |
| Cow | OR2J1 | 87% | 309 |
| Cow | OR2J3C | 88% | 304 |
| Cow | OR2J3 | 87% | 304 |
| Cow | OR2J3B | 86% | 304 |
| Orang | OR2J1 | 93% | 310 |
| Horse | OR2J1 | 89% | 309 |
| Horse | OR2J1B | 89% | 305 |
| Horse | OR2J3 | 88% | 304 |
| Chimp | OR2J1 | 98% | 310 |
Expression evidences
| Source | Accession |
|---|---|
| GNF Atlas2 | 216818_s_at |
Sequence information
| Nucleotide sequence |
ATGAAAAAAAATGCAAGTTTTGAAGACTTCTTTATTCTACTTGGATTTTCTAACTGGCCT CATCTGGAAGTAGTTCTCTTTGTGGTTATCTTGATCTTCTACTTGATAACACTGATAGGA AACCTGTTCATCATCATCCTGTCATACCTGGACTCCCATCTCCACACTCCCATGTACTTC TTCCTTTCAAATCTCTCATTTCTGGATCTCTGCTACACCACCAGCTCTATCCCTCAGTTG CTGGTGAATCTCTGGGGCCCGGAAAAGACCATCTCTTATGCTGGTTGTACAGTTCAACTT TACTTTGTTCTCGCACTGGGAACCGCAGAGTGTGTCCTACTGGTGGTGATGTCCTATGAT CGTTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCACCCTCGTTTCTGC CGCTTGTTGGCTGCGGCTTCTTGGGTAAGTGGTTTTACAACCTCAGCACTTCATTCCTCC TTTACTTTCTGGATACCCCTATGTAGACATCGCCTAGTGGATCACTTCTTCTGTGAAGCT CCAGCACTTCTGCGATTATCATGTGTTGATACCTAGGCAAATGAGCTGACCCTCATGGTC ATGAGCTCCATTTTTGTTCTCATACCTCTCATCCTCATCCTCACTTCCTATGGTGCCATT GCCCGGGCTGTACTGAGCATGCAATCAACCACTGGGCTTCAGAAAGTGCTTAGGACATGT GGAGCCCATCTTATGGTTGTATCTCTCTTTTTCATTCCAGTCATGTGCATGTATCTCCAG CCACCATCAGAAAATTCTCAAGATCAAGGCAAGTTCATTGCCCTCTTTTACACTGTTGTC ACACCTAGTCTTAACCCTCTAATCTACACTTTCAGAAACAAGGATGTAAGAGGGGCAGTG AAGAGACTAATGGGGTGGGAATGGGGGATG |
| Conceptual translation |
MKKNASFEDFFILLGFSNWPHLEVVLFVVILIFYLITLIGNLFIIILSYLDSHLHTPMYF FLSNLSFLDLCYTTSSIPQLLVNLWGPEKTISYAGCTVQLYFVLALGTAECVLLVVMSYD RYAAVCRPLHYTVLMHPRFCRLLAAASWVSGFTTSALHSSFTFWIPLCRHRLVDHFFCEA PALLRLSCVDTXNELTLMVMSSIFVLIPLILILTSYGAIARAVLSMQSTTGLQKVLRTC GAHLMVVSLFFIPVMCMYLQPPSENSQDQGKFIALFYTVVTPSLNPLIYTFRNKDVRGAV KRLMGWEWGM Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 6 | 29,069,299 | 29,069,299 | rescued_nonsense | C/T | rs2394517 (DbSNP) | |
| 6 | 29,068,759 | 29,068,759 | SNP | A/C | rs3131087 (DbSNP) | |
| 6 | 29,069,016 | 29,069,016 | SNP | A/G | rs3131088 (DbSNP) | |
| 6 | 29,069,337 | 29,069,337 | SNP | A/T | rs2394518 (DbSNP) | |
| 6 | 29,069,361 | 29,069,361 | SNP | C/G | rs72500873 (DbSNP) | |
| 6 | 29,069,264 | 29,069,264 | SNP | C/T | rs2394516 (DbSNP) | |
| 6 | 29,069,371 | 29,069,371 | SNP | T/C | rs72500874 (DbSNP) | |
| 6 | 29,100,982 | 29,100,982 | SNP | C/A | 1000GP (CEU, CHBJPT) | |
| 6 | 29,101,239 | 29,101,239 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 6 | 29,101,487 | 29,101,487 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 6 | 29,101,522 | 29,101,522 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 6 | 29,101,560 | 29,101,560 | SNP | A/T | 1000GP (CEU, CHBJPT) | |
| 6 | 100 | -100 | SNP | C/A | 1000GP (YRI, YRI, YRI, YRI) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.