OR2L6P Olfactory Receptor
| Gene Symbol | OR2L6P1 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | L |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR1.5.22P, ORL3076 |
| External Ids | HGNC: 15012 GeneBank: NG_004274 ORDB: ORL3076 |
| Build #39 labels | OR2L6P |
| Chromosomal location | 1:248,003,131-248,004,066 (+) |
| Cluster | 1@248 |
| Synteny | CLIC#5 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2L3 | 92.63% | 312 |
| OR2L8 | 92.63% | 312 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR2L3B | 80% | 312 |
| Mouse | Or2l5 | 76% | 312 |
| Rat | Or2l5b | 76% | 312 |
| Cow | OR2L3 | 83% | 312 |
| Cow | OR2L3C | 80% | 312 |
| Orang | OR2L3 | 90% | 312 |
| Orang | OR2L3D | 89% | 312 |
| Horse | OR2L5JP | 82% | 312 |
| Horse | OR2L5 | 82% | 307 |
| Horse | OR2L5D | 81% | 307 |
| Chimp | OR2L6 | 96% | 312 |
Sequence information
| Nucleotide sequence |
ATGGAAAATTGCAATCAAACATCAACTGATTTCATCTTACTGGGGCTGTTCCCACCATCA AGAATTGGCCTTTTCCTCTTCATCCTCATTGTTTTCATTTTCCTAATGGCTCTAATTGGA AACCTATCCATGATTCTTCTCATCTTCTTGGACACTCATCTCCACACACCCATGTGTTTC CTACTTAGTCAGCTCTCCCTCATTGACCTAAATTACATCTCCACCATTGTTCCTAAGATG GCATCTGATTTTCTGCATGGAAACAAGTCTATCTCCTTCACTGGGTGTGGGATTCAGAGT TTCTTCTTCACGACTTTAGCCGTTGTAGAAGCGCTACTCCTGATATCAATGGCCTATGTT CGTTGCATTGCTATTTGCTTTCCTCTCCACTATCTCATCCGCATGAGCAAAAGAGTGTGT GTGCTGATGATAACAGGATCTTGGATCATAGGCTCGATCAATGCTTGTGCTCACACTGTA TATATACTCCATATTCCTTATTGCCCATCTAGGGTTATCAATCATTTCTTCTGTGATGTC CCAGCAATGGTGACTCTGGCCTGCATGGACACCTGGGTCTATGAGGGCACAGTGCTTTTG AGTGCCACCATCTTTCTCGTGTTTCCCTTCATTGCTATTTCATGTTCCTATGGCCGGGTT CTCCTTGCTGTCTACCACATGAAATCTGCAGAAGGGAAGAAGAAGGCCTACCTGACCTGC AGCACCCACCTCACTGTAGTAACTTTCTACTATACACCTTTTGTCTACACCTATCTACGT CCAAGATCCCTGTAATCTCCAACAGAGGACAAGGTTCTGGCTGTCTTCTACACCACCCTC ACCCCAATGCTCAACCCCATCATCTATAGCCTGAGGAACAAGGAGGTGATGGGGGCCCTG ACACGAGTGAGTCAGAGAATCTGCTCTGTGAAAATG |
| Conceptual translation |
MENCNQTSTDFILLGLFPPSRIGLFLFILIVFIFLMALIGNLSMILLIFLDTHLHTPMCF LLSQLSLIDLNYISTIVPKMASDFLHGNKSISFTGCGIQSFFFTTLAVVEALLLISMAYV RCIAICFPLHYLIRMSKRVCVLMITGSWIIGSINACAHTVYILHIPYCPSRVINHFFCDV PAMVTLACMDTWVYEGTVLLSATIFLVFPFIAISCSYGRVLLAVYHMKSAEGKKKAYLTC STHLTVVTFYYTPFVYTYLRPRSLXPTEDKVLAVFYTTLTPMLNPIIYSLRNKEVMGAL TRVSQRICSVKM Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 1 | 248,163,444 | 248,163,451 | large insertion | 6103bp insertion | rs71911300 (DbSNP) | |
| 1 | 248,167,136 | 248,167,136 | SNP | A/T | rs73139492 (DbSNP) | |
| 1 | 248,167,139 | 248,167,139 | SNP | C/G | rs72763234 (DbSNP) | |
| 1 | 248,166,472 | 248,166,472 | SNP | C/T | rs74155869 (DbSNP) | |
| 1 | 248,166,526 | 248,166,526 | SNP | C/T | rs61856388 (DbSNP) | |
| 1 | 248,167,018 | 248,167,018 | SNP | G/T | rs72475095 (DbSNP) | |
| 1 | 248,003,170 | 248,003,170 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 1 | 248,003,716 | 248,003,716 | SNP | G/T | 1000GP (CEU, CHBJPT) | |
| 1 | 248,003,837 | 248,003,837 | SNP | C/G | 1000GP (CEU, CHBJPT) | |
| 1 | 248,003,966 | 248,003,966 | SNP | C/T | 1000GP (CEU) | |
| 1 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 1 | 247,753,334 | 248,322,316 | CopyNumber | Variation_2358 (DGV) |
| 1 | 247,714,585 | 248,277,146 | CopyNumber | Variation_3339 (DGV) |
| 1 | 247,074,430 | 248,328,835 | CopyNumber | Variation_6816 (DGV) |
| 1 | 247,753,207 | 248,376,070 | CopyNumber | Variation_8353 (DGV) |
| 1 | 248,060,959 | 249,167,690 | CopyNumber | Variation_8354 (DGV) |
| 1 | 247,849,473 | 248,277,638 | CopyNumber | Variation_48302 (DGV) |
| 1 | 247,849,473 | 248,285,441 | CopyNumber | Variation_48303 (DGV) |
| 1 | 248,145,644 | 248,277,638 | CopyNumber | Variation_48304 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.